Pregenerated sensors for MRPL40 (Homo sapiens)
Ensembl gene IDs: ENSG00000185608Ensembl transcript IDs: ENST00000333130.4, ENST00000443660.5, ENST00000471259.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACAGGCGAGTCCTGGCGGACAGTCGCGAAGACCCCGCACGCGCCCTaGGCACTCCGCTATCCGGCCAGCGTCCGCACTCACCCGCTAGTC | + |
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Preference number: 5 (lower is better) Translates to: TGESWRTVAKTPHAP*ALRYPASVRTHPLV Trigger: GACTAGCGGGTGAGTGCGGACGCTGGCCGGATAGCGGAGTGCCCAGGGCGCGTGCGGGGTCTTCGCGACTGTCCGCCAGGACTCGCCTGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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| CDS CCA 90 bp | AGATATTCGTGGACTGGGAGGCGAGCAGGGAGCACAGGCGAGTCCTaGCGGACAGTCGCGAAGACCCCGCACGCGCCCTGGGCACTCCGC | + |
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Preference number: 5 (lower is better) Translates to: RYSWTGRRAGSTGES*RTVAKTPHAPWALR Trigger: GCGGAGTGCCCAGGGCGCGTGCGGGGTCTTCGCGACTGTCCGCCAGGACTCGCCTGTGCTCCCTGCTCGCCTCCCAGTCCACGAATATCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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| CDS CCA 90 bp | ATAAGAGTCACGACCAGATGGCTCATCCCTGAGATATTCGTGGACTaGGAGGCGAGCAGGGAGCACAGGCGAGTCCTGGCGGACAGTCGC | + |
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Preference number: 5 (lower is better) Translates to: IRVTTRWLIPEIFVD*EASREHRRVLADSR Trigger: GCGACTGTCCGCCAGGACTCGCCTGTGCTCCCTGCTCGCCTCCCAGTCCACGAATATCTCAGGGATGAGCCATCTGGTCGTGACTCTTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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| CDS CCA 90 bp | CTCGCCAGGGTGCTCAGATTTTCATGCATAAGAGTCACGACCAGATaGCTCATCCCTGAGATATTCGTGGACTGGGAGGCGAGCAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: LARVLRFSCIRVTTR*LIPEIFVDWEASRE Trigger: CTCCCTGCTCGCCTCCCAGTCCACGAATATCTCAGGGATGAGCCATCTGGTCGTGACTCTTATGCATGAAAATCTGAGCACCCTGGCGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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| CDS CCA 72 bp | TCCTGGCGGACAGTCGCGAAGACCCCGCACGCGCCCTaGGCACTCCGCTATCCGGCCAGCGTCCGCACTCAC | + |
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Preference number: 6 (lower is better) Translates to: SWRTVAKTPHAP*ALRYPASVRTH Trigger: GTGAGTGCGGACGCTGGCCGGATAGCGGAGTGCCCAGGGCGCGTGCGGGGTCTTCGCGACTGTCCGCCAGGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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| CDS CCA 72 bp | TGGACTGGGAGGCGAGCAGGGAGCACAGGCGAGTCCTaGCGGACAGTCGCGAAGACCCCGCACGCGCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: WTGRRAGSTGES*RTVAKTPHAPW Trigger: CCAGGGCGCGTGCGGGGTCTTCGCGACTGTCCGCCAGGACTCGCCTGTGCTCCCTGCTCGCCTCCCAGTCCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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| CDS CCA 72 bp | GAGTCACGACCAGATGGCTCATCCCTGAGATATTCGTaGACTGGGAGGCGAGCAGGGAGCACAGGCGAGTCC | + |
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Preference number: 6 (lower is better) Translates to: ESRPDGSSLRYS*TGRRAGSTGES Trigger: GGACTCGCCTGTGCTCCCTGCTCGCCTCCCAGTCCACGAATATCTCAGGGATGAGCCATCTGGTCGTGACTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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| CDS GCA 72 bp | GCAGGACCGCTGCTCGCCAGGGTGCTCAGATTTTCATaGATAAGAGTCACGACCAGATGGCTCATCCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: AGPLLARVLRFS*IRVTTRWLIPE Trigger: CTCAGGGATGAGCCATCTGGTCGTGACTCTTATGCATGAAAATCTGAGCACCCTGGCGAGCAGCGGTCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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| CDS CCA 72 bp | GGGAACAGGTTAGGATCCCGCTTGATGGCCTCAGCATaGAGCTTCGGGGATTCCAGTTGCAGTTCCTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: GNRLGSRLMASA*SFGDSSCSSSR Trigger: TCTGGAGGAACTGCAACTGGAATCCCCGAAGCTCCATGCTGAGGCCATCAAGCGGGATCCTAACCTGTTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000333130.4 ENST00000443660.5 ENST00000471259.1 |
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| CDS TCA 72 bp | ATGAGTTCCCAGAAAGACAACAATGACGCTCGCTGGTaGGTCTCTCTAAGCTGCGTCTGCCAAGTTCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: MSSQKDNNDARW*VSLSCVCQVPR Trigger: TCTGGGAACTTGGCAGACGCAGCTTAGAGAGACTCACCAGCGAGCGTCATTGTTGTCTTTCTGGGAACTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000333130.4 ENST00000443660.5 ENST00000471259.1 |
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| CDS CCA 72 bp | GTGCTCAGATTTTCATGCATAAGAGTCACGACCAGATaGCTCATCCCTGAGATATTCGTGGACTGGGAGGCG | + |
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Preference number: 6 (lower is better) Translates to: VLRFSCIRVTTR*LIPEIFVDWEA Trigger: CGCCTCCCAGTCCACGAATATCTCAGGGATGAGCCATCTGGTCGTGACTCTTATGCATGAAAATCTGAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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| CDS CCA 72 bp | AGTTCCCAGAAGCTTGATATGACAGCAAGGTCAACGTaGAAGGTTTTTCAAAATCTTTCGTTCAGACCACAG | + |
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Preference number: 6 (lower is better) Translates to: SSQKLDMTARST*KVFQNLSFRPQ Trigger: CTGTGGTCTGAACGAAAGATTTTGAAAAACCTTCCACGTTGACCTTGCTGTCATATCAAGCTTCTGGGAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000443660.5 |
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