RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MDS2 (Homo sapiens)

Ensembl gene IDs: ENSG00000197880

Ensembl transcript IDs: ENST00000374555.7, ENST00000477916.5

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CTGTGGAGGCGACAGCCAGGTCTTAATGGCCTCTCCAGGGTCAGCTaGGGCCTGCCACGGGCACCTCCCCTCATAGCTGGACTGCTATTC +
Preference number: 5 (lower is better)
Translates to: LWRRQPGLNGLSRVS*GLPRAPPLIAGLLF
Trigger: GAATAGCAGTCCAGCTATGAGGGGAGGTGCCCGTGGCAGGCCTCAGCTGACCCTGGAGAGGCCATTAAGACCTGGCTGTCGCCTCCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374555.7
ENST00000477916.5
CDS CCA 90 bp GGGGCAGAGTTAGTGATGTGTGAAACAGTCTATTCTCAGCCAGGCTaGGATCAAGGGCTTCATGGTGGGCCGGCCAAGAGCTATCAGTGT +
Preference number: 5 (lower is better)
Translates to: GAELVMCETVYSQPG*DQGLHGGPAKSYQC
Trigger: ACACTGATAGCTCTTGGCCGGCCCACCATGAAGCCCTTGATCCCAGCCTGGCTGAGAATAGACTGTTTCACACATCACTAACTCTGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS GCA 90 bp ATTTATTCCTCACAGTTGTGGAGGCTGGGAAGTCCAAGATTAAGGTaGCAGCAGATTCCTGGTGAGGGCTCTCTCCCTGGGTTTGCAGAC +
Preference number: 5 (lower is better)
Translates to: IYSSQLWRLGSPRLR*QQIPGEGSLPGFAD
Trigger: GTCTGCAAACCCAGGGAGAGAGCCCTCACCAGGAATCTGCTGGCACCTTAATCTTGGACTTCCCAGCCTCCACAACTGTGAGGAATAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374555.7
ENST00000477916.5
CDS TCA 90 bp CATTCCCTCTCAAGGGGTGAGTGCTCACCAAGTGGAATTGGAGTGTaGCTCTGTAGCAGTGATTCATGCACAACGTGCTCTCTCTCTCTC +
Preference number: 5 (lower is better)
Translates to: HSLSRGECSPSGIGV*LCSSDSCTTCSLSL
Trigger: GAGAGAGAGAGAGCACGTTGTGCATGAATCACTGCTACAGAGTCACACTCCAATTCCACTTGGTGAGCACTCACCCCTTGAGAGGGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS CCA 90 bp GGGCAGATGTATGTGAAGTTCTTAGCAGGGCACTCACCATCTGTTTaGTGTTCAGTAAACCTTCATGTCCTGCTACTAGCTCTGAGCCAG +
Preference number: 5 (lower is better)
Translates to: GQMYVKFLAGHSPSV*CSVNLHVLLLALSQ
Trigger: CTGGCTCAGAGCTAGTAGCAGGACATGAAGGTTTACTGAACACCAAACAGATGGTGAGTGCCCTGCTAAGAACTTCACATACATCTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS CAA 72 bp GCCAGCAGATTCCTGGTGAGGGCTCTCTCCCTGGGTTaGCAGACAGCCACCCTCTTGCTGGGTCCTCACATG +
Preference number: 6 (lower is better)
Translates to: ASRFLVRALSLG*QTATLLLGPHM
Trigger: CATGTGAGGACCCAGCAAGAGGGTGGCTGTCTGCAAACCCAGGGAGAGAGCCCTCACCAGGAATCTGCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374555.7
ENST00000477916.5
CDS GCA 72 bp TCACAGTTGTGGAGGCTGGGAAGTCCAAGATTAAGGTaGCAGCAGATTCCTGGTGAGGGCTCTCTCCCTGGG +
Preference number: 6 (lower is better)
Translates to: SQLWRLGSPRLR*QQIPGEGSLPG
Trigger: CCCAGGGAGAGAGCCCTCACCAGGAATCTGCTGGCACCTTAATCTTGGACTTCCCAGCCTCCACAACTGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374555.7
ENST00000477916.5
CDS CCA 72 bp CTATTCTCAGCCAGGCTGGGATCAAGGGCTTCATGGTaGGCCGGCCAAGAGCTATCAGTGTTACTGGAATTC +
Preference number: 6 (lower is better)
Translates to: LFSARLGSRASW*AGQELSVLLEF
Trigger: GAATTCCAGTAACACTGATAGCTCTTGGCCGGCCCACCATGAAGCCCTTGATCCCAGCCTGGCTGAGAATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS CCA 72 bp AGTCTATTCTCAGCCAGGCTGGGATCAAGGGCTTCATaGTGGGCCGGCCAAGAGCTATCAGTGTTACTGGAA +
Preference number: 6 (lower is better)
Translates to: SLFSARLGSRAS*WAGQELSVLLE
Trigger: TTCCAGTAACACTGATAGCTCTTGGCCGGCCCACCATGAAGCCCTTGATCCCAGCCTGGCTGAGAATAGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS CCA 72 bp TTAGTGATGTGTGAAACAGTCTATTCTCAGCCAGGCTaGGATCAAGGGCTTCATGGTGGGCCGGCCAAGAGC +
Preference number: 6 (lower is better)
Translates to: LVMCETVYSQPG*DQGLHGGPAKS
Trigger: GCTCTTGGCCGGCCCACCATGAAGCCCTTGATCCCAGCCTGGCTGAGAATAGACTGTTTCACACATCACTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS TCA 72 bp GAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTaGAATCCCGTCTACAACTCCAGGCAAGAAACAGTG +
Preference number: 6 (lower is better)
Translates to: EVRRSRPSWLTR*NPVYNSRQETV
Trigger: CACTGTTTCTTGCCTGGAGTTGTAGACGGGATTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374555.7
CDS CAA 90 bp GCAGGTCACATTCCCTCTCAAGGGGTGAGTGCTCACCAAGTGGAATaGGAGTGTGACTCTGTAGCAGTGATTCATGCACAACGTGCTCTC +
Preference number: 6 (lower is better)
Translates to: AGHIPSQGVSAHQVE*ECDSVAVIHAQRAL
Trigger: GAGAGCACGTTGTGCATGAATCACTGCTACAGAGTCACACTCCAATTCCACTTGGTGAGCACTCACCCCTTGAGAGGGAATGTGACCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS CCA 72 bp GAAGGTGGAGCTCATGCTATTCCTGATGGGTCAGTTTaGGGTGTAGAGATGGGACAGTTGAGTTTGTCAGCG +
Preference number: 6 (lower is better)
Translates to: EGGAHAIPDGSV*GVEMGQLSLSA
Trigger: CGCTGACAAACTCAACTGTCCCATCTCTACACCCCAAACTGACCCATCAGGAATAGCATGAGCTCCACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374555.7
CDS TCA 72 bp TCAAGGGGTGAGTGCTCACCAAGTGGAATTGGAGTGTaGCTCTGTAGCAGTGATTCATGCACAACGTGCTCT +
Preference number: 6 (lower is better)
Translates to: SRGECSPSGIGV*LCSSDSCTTCS
Trigger: AGAGCACGTTGTGCATGAATCACTGCTACAGAGTCACACTCCAATTCCACTTGGTGAGCACTCACCCCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS CAA 90 bp GGGGCAGATGTATGTGAAGTTCTTAGCAGGGCACTCACCATCTGTTaGGTGTTCAGTAAACCTTCATGTCCTGCTACTAGCTCTGAGCCA +
Preference number: 6 (lower is better)
Translates to: GADVCEVLSRALTIC*VFSKPSCPATSSEP
Trigger: TGGCTCAGAGCTAGTAGCAGGACATGAAGGTTTACTGAACACCAAACAGATGGTGAGTGCCCTGCTAAGAACTTCACATACATCTGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS CAA 72 bp ATTCCCTCTCAAGGGGTGAGTGCTCACCAAGTGGAATaGGAGTGTGACTCTGTAGCAGTGATTCATGCACAA +
Preference number: 6 (lower is better)
Translates to: IPSQGVSAHQVE*ECDSVAVIHAQ
Trigger: TTGTGCATGAATCACTGCTACAGAGTCACACTCCAATTCCACTTGGTGAGCACTCACCCCTTGAGAGGGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS CAA 72 bp GTATGTGAAGTTCTTAGCAGGGCACTCACCATCTGTTaGGTGTTCAGTAAACCTTCATGTCCTGCTACTAGC +
Preference number: 6 (lower is better)
Translates to: VCEVLSRALTIC*VFSKPSCPATS
Trigger: GCTAGTAGCAGGACATGAAGGTTTACTGAACACCAAACAGATGGTGAGTGCCCTGCTAAGAACTTCACATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477916.5
CDS CCA 72 bp TATGTGAAGTTCTTAGCAGGGCACTCACCATCTGTTTaGTGTTCAGTAAACCTTCATGTCCTGCTACTAGCT +
Preference number: 6 (lower is better)
Translates to: YVKFLAGHSPSV*CSVNLHVLLLA
Trigger: AGCTAGTAGCAGGACATGAAGGTTTACTGAACACCAAACAGATGGTGAGTGCCCTGCTAAGAACTTCACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477916.5