Pregenerated sensors for LNCSRLR (Homo sapiens)
Ensembl gene IDs: ENSG00000240032Ensembl transcript IDs: ENST00000490375.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGGGAGATGTCTTTGAACTGTACCACAAGAGATATTAAGCTGGCTTaGACTGGTAGGAACGAACCGATCTGCTTTTATAACCAGAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: WEMSLNCTTRDIKLA*TGRNEPICFYNQSL Trigger: CAGACTCTGGTTATAAAAGCAGATCGGTTCGTTCCTACCAGTGCAAGCCAGCTTAATATCTCTTGTGGTACAGTTCAAAGACATCTCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS TCA 90 bp | CAGTGCTGCAACAAACACAGGAGTGCAGATATTGCTTCGGCACACTaGTTTCTTTTTCTTCTGGGTATATATCAAGCACTGGAATTGCTG | + |
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Preference number: 5 (lower is better) Translates to: QCCNKHRSADIASAH*FLFLLGIYQALELL Trigger: CAGCAATTCCAGTGCTTGATATATACCCAGAAGAAAAAGAAATCAGTGTGCCGAAGCAATATCTGCACTCCTGTGTTTGTTGCAGCACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS CAA 72 bp | TGGAGGGGTCCCTTTTCTCCACATCCTCTCAAGCATTaGTTATTGCCTGTCTGGGAGATGTCTTTGAACTGT | + |
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Preference number: 6 (lower is better) Translates to: WRGPFSPHPLKH*LLPVWEMSLNC Trigger: ACAGTTCAAAGACATCTCCCAGACAGGCAATAACAAATGCTTGAGAGGATGTGGAGAAAAGGGACCCCTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS GCA 72 bp | AGGCTGTCTCCAAATCTTACCTATTGTGAACAGTGCTaGAACAAACACAGGAGTGCAGATATTGCTTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: RLSPNLTYCEQC*NKHRSADIASA Trigger: TGCCGAAGCAATATCTGCACTCCTGTGTTTGTTGCAGCACTGTTCACAATAGGTAAGATTTGGAGACAGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS CAA 90 bp | ATGTGGAGGGGTCCCTTTTCTCCACATCCTCTCAAGCATTTGTTATaGCCTGTCTGGGAGATGTCTTTGAACTGTACCACAAGAGATATT | + |
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Preference number: 6 (lower is better) Translates to: MWRGPFSPHPLKHLL*PVWEMSLNCTTRDI Trigger: AATATCTCTTGTGGTACAGTTCAAAGACATCTCCCAGACAGGCAATAACAAATGCTTGAGAGGATGTGGAGAAAAGGGACCCCTCCACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS CAA 72 bp | GTGAACAGTGCTGCAACAAACACAGGAGTGCAGATATaGCTTCGGCACACTGATTTCTTTTTCTTCTGGGTA | + |
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Preference number: 6 (lower is better) Translates to: VNSAATNTGVQI*LRHTDFFFFWV Trigger: TACCCAGAAGAAAAAGAAATCAGTGTGCCGAAGCAATATCTGCACTCCTGTGTTTGTTGCAGCACTGTTCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS GCA 72 bp | TTTAGGCTGTCTCCAAATCTTACCTATTGTGAACAGTaGTGCAACAAACACAGGAGTGCAGATATTGCTTCG | + |
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Preference number: 6 (lower is better) Translates to: FRLSPNLTYCEQ*CNKHRSADIAS Trigger: CGAAGCAATATCTGCACTCCTGTGTTTGTTGCAGCACTGTTCACAATAGGTAAGATTTGGAGACAGCCTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS TCA 72 bp | GAACCGATCTGCTTTTATAACCAGAGTCTGTTCCGATaGGTTGGCATCTACATCATACCAGGTGTTACATAT | + |
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Preference number: 6 (lower is better) Translates to: EPICFYNQSLFR*VGIYIIPGVTY Trigger: ATATGTAACACCTGGTATGATGTAGATGCCAACTCATCGGAACAGACTCTGGTTATAAAAGCAGATCGGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS GCA 72 bp | TCTTTGAACTGTACCACAAGAGATATTAAGCTGGCTTaGACTGGTAGGAACGAACCGATCTGCTTTTATAAC | + |
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Preference number: 6 (lower is better) Translates to: SLNCTTRDIKLA*TGRNEPICFYN Trigger: GTTATAAAAGCAGATCGGTTCGTTCCTACCAGTGCAAGCCAGCTTAATATCTCTTGTGGTACAGTTCAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS CAA 72 bp | CGATCTGCTTTTATAACCAGAGTCTGTTCCGATGAGTaGGCATCTACATCATACCAGGTGTTACATATTTTG | + |
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Preference number: 6 (lower is better) Translates to: RSAFITRVCSDE*ASTSYQVLHIL Trigger: CAAAATATGTAACACCTGGTATGATGTAGATGCCAACTCATCGGAACAGACTCTGGTTATAAAAGCAGATCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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| CDS TCA 72 bp | AGTTGGCATCTACATCATACCAGGTGTTACATATTTTaGAAACCATTCCTGATGTACAGTAACATAATTCAC | + |
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Preference number: 6 (lower is better) Translates to: SWHLHHTRCYIF*KPFLMYSNIIH Trigger: GTGAATTATGTTACTGTACATCAGGAATGGTTTTCAAAATATGTAACACCTGGTATGATGTAGATGCCAACT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490375.1 |
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