Pregenerated sensors for LITAFD (Homo sapiens)
Ensembl gene IDs: ENSG00000283516Ensembl transcript IDs: ENST00000636296.1, ENST00000637237.1, ENST00000637929.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCTGGGCGTGAGCGGGGCCACCTCTCACTGTACGCTGGACGCACCTaGGACCCAGGCAGAGTCTGGGAGGGGCCCGAACAGGAAGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: AGRERGHLSLYAGRT*DPGRVWEGPEQEEG Trigger: ACCCTCTTCCTGTTCGGGCCCCTCCCAGACTCTGCCTGGGTCCCAGGTGCGTCCAGCGTACAGTGAGAGGTGGCCCCGCTCACGCCCAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000637929.1 |
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| CDS CCA 90 bp | AGGGCAGGGGCTTCCCGTGGGCATGGCTTGAACAGCCTTTGGAGATaGCCCTGCTCCATGTTTCCACGGCCCCACATGGTGGGTGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: RAGASRGHGLNSLWR*PCSMFPRPHMVGGW Trigger: CCACCCACCCACCATGTGGGGCCGTGGAAACATGGAGCAGGGCCATCTCCAAAGGCTGTTCAAGCCATGCCCACGGGAAGCCCCTGCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS GCA 90 bp | GGGGCTTCCCGTGGGCATGGCTTGAACAGCCTTTGGAGATGGCCCTaGTCCATGTTTCCACGGCCCCACATGGTGGGTGGGTGGGAGATT | + |
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Preference number: 5 (lower is better) Translates to: GASRGHGLNSLWRWP*SMFPRPHMVGGWEI Trigger: AATCTCCCACCCACCCACCATGTGGGGCCGTGGAAACATGGAGCAGGGCCATCTCCAAAGGCTGTTCAAGCCATGCCCACGGGAAGCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS CCA 90 bp | CATAGACACGGGTGTGCCCAGGTGGCACCCCTGGCATTTATTTCTTaGGGGCTCACAGGCGGTGGTAGTAGAAGAGCTCGCGCTGACACA | + |
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Preference number: 5 (lower is better) Translates to: HRHGCAQVAPLAFIS*GLTGGGSRRARADT Trigger: TGTGTCAGCGCGAGCTCTTCTACTACCACCGCCTGTGAGCCCCCAAGAAATAAATGCCAGGGGTGCCACCTGGGCACACCCGTGTCTATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000637237.1 |
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| CDS TCA 90 bp | CCTGTCCACCTCTTGCTGGGCCTGGCTCCAGTAGAACAGCCATTGTaGTGTGTGCCTTCACTGTGGCCTCATCCTCACTTCCTGCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: PVHLLLGLAPVEQPL*CVPSLWPHPHFLQE Trigger: CTCCTGCAGGAAGTGAGGATGAGGCCACAGTGAAGGCACACATCACAATGGCTGTTCTACTGGAGCCAGGCCCAGCAAGAGGTGGACAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS GCA 90 bp | GCTGACACACGGGACACGAGTGCTTCACGTCCATTAGGCTCCTTATaGAGAATGCCAGGAAGCAGCAGCCCAGGACGTACCCGAACAGGA | + |
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Preference number: 5 (lower is better) Translates to: ADTRDTSASRPLGSL*RMPGSSSPGRTRTG Trigger: TCCTGTTCGGGTACGTCCTGGGCTGCTGCTTCCTGGCATTCTGCATAAGGAGCCTAATGGACGTGAAGCACTCGTGTCCCGTGTGTCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000636296.1 ENST00000637237.1 |
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| CDS GCA 90 bp | AACAGTGCCTGGGCAGCACCGTGTTCTGAGCTCCGAGTGCTCATGTaGTTATTTCTAGGAATTCTCATGAGGAGGCCCGGTTGCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: NSAWAAPCSELRVLM*LFLGILMRRPGCQE Trigger: CTCCTGGCAACCGGGCCTCCTCATGAGAATTCCTAGAAATAAGCACATGAGCACTCGGAGCTCAGAACACGGTGCTGCCCAGGCACTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS CCA 90 bp | TTTCCACGGCCCCACATGGTGGGTGGGTGGGAGATTGCTGACGGCTaGGTGGGGAAACTGATCAAGGGTCTGAAATATAGTCCTGTTAGA | + |
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Preference number: 5 (lower is better) Translates to: FPRPHMVGGWEIADG*VGKLIKGLKYSPVR Trigger: TCTAACAGGACTATATTTCAGACCCTTGATCAGTTTCCCCACCCAGCCGTCAGCAATCTCCCACCCACCCACCATGTGGGGCCGTGGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS TCA 90 bp | ATTTGGCGACTTCCTTGCAACACTTTAAGGGAGAGTACAGCACGTTaGAAGCCCCACTGCCCAATGGTCTCTATTGGGTTCCGTGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: IWRLPCNTLRESTAR*KPHCPMVSIGFRGP Trigger: GGGGCCACGGAACCCAATAGAGACCATTGGGCAGTGGGGCTTTCAACGTGCTGTACTCTCCCTTAAAGTGTTGCAAGGAAGTCGCCAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637237.1 |
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| CDS GCA 72 bp | TCCTGCGGTCTCCAGAGTAGACTTCTTCCCGGTCCCTaGCAGCCCTGGCCCCTGAATGAGGGGAGCCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: SCGLQSRLLPGP*QPWPLNEGSPH Trigger: GTGAGGGCTCCCCTCATTCAGGGGCCAGGGCTGGCAGGGACCGGGAAGAAGTCTACTCTGGAGACCGCAGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000637237.1 |
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| CDS CCA 72 bp | GATGGCCCTGCTCCATGTTTCCACGGCCCCACATGGTaGGTGGGTGGGAGATTGCTGACGGCTGGGTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: DGPAPCFHGPTW*VGGRLLTAGWG Trigger: TCCCCACCCAGCCGTCAGCAATCTCCCACCCACCCACCATGTGGGGCCGTGGAAACATGGAGCAGGGCCATC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS GCA 72 bp | CGGCCTGCACCGGCATGGACGTCCCCACCACGGACATaGCGGCATACAGCTGAACAACTTGGGGGCCTTCAA | + |
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Preference number: 6 (lower is better) Translates to: RPAPAWTSPPRT*RHTAEQLGGLQ Trigger: TTGAAGGCCCCCAAGTTGTTCAGCTGTATGCCGGCATGTCCGTGGTGGGGACGTCCATGCCGGTGCAGGCCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000636296.1 ENST00000637237.1 ENST00000637929.1 |
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| CDS CCA 72 bp | GGTTTCCACAGTAGGGACACACGGCCTGCACCGGCATaGACGTCCCCACCACGGACATGCCGGCATACAGCT | + |
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Preference number: 6 (lower is better) Translates to: GFHSRDTRPAPA*TSPPRTCRHTA Trigger: AGCTGTATGCCGGCATGTCCGTGGTGGGGACGTCCATGCCGGTGCAGGCCGTGTGTCCCTACTGTGGAAACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000636296.1 ENST00000637237.1 ENST00000637929.1 |
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| CDS GCA 72 bp | CGTGGGCATGGCTTGAACAGCCTTTGGAGATGGCCCTaGTCCATGTTTCCACGGCCCCACATGGTGGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: RGHGLNSLWRWP*SMFPRPHMVGG Trigger: CCCACCCACCATGTGGGGCCGTGGAAACATGGAGCAGGGCCATCTCCAAAGGCTGTTCAAGCCATGCCCACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS TCA 72 bp | TCCACGGCCCCACATGGTGGGTGGGTGGGAGATTGCTaGCGGCTGGGTGGGGAAACTGATCAAGGGTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: STAPHGGWVGDC*RLGGETDQGSE Trigger: TTCAGACCCTTGATCAGTTTCCCCACCCAGCCGTCAGCAATCTCCCACCCACCCACCATGTGGGGCCGTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS CCA 72 bp | GGGTGTGCCCAGGTGGCACCCCTGGCATTTATTTCTTaGGGGCTCACAGGCGGTGGTAGTAGAAGAGCTCGC | + |
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Preference number: 6 (lower is better) Translates to: GCAQVAPLAFIS*GLTGGGSRRAR Trigger: GCGAGCTCTTCTACTACCACCGCCTGTGAGCCCCCAAGAAATAAATGCCAGGGGTGCCACCTGGGCACACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000636296.1 ENST00000637237.1 |
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| CDS CCA 72 bp | TGCTCCATGTTTCCACGGCCCCACATGGTGGGTGGGTaGGAGATTGCTGACGGCTGGGTGGGGAAACTGATC | + |
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Preference number: 6 (lower is better) Translates to: CSMFPRPHMVGG*EIADGWVGKLI Trigger: GATCAGTTTCCCCACCCAGCCGTCAGCAATCTCCCACCCACCCACCATGTGGGGCCGTGGAAACATGGAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS CCA 72 bp | GCTTCCCGTGGGCATGGCTTGAACAGCCTTTGGAGATaGCCCTGCTCCATGTTTCCACGGCCCCACATGGTG | + |
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Preference number: 6 (lower is better) Translates to: ASRGHGLNSLWR*PCSMFPRPHMV Trigger: CACCATGTGGGGCCGTGGAAACATGGAGCAGGGCCATCTCCAAAGGCTGTTCAAGCCATGCCCACGGGAAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS CCA 72 bp | GACCAGCAGGATAAGGATCCGGGGATGATTCCATCCTaGTGCTCTGGAGGGCCTCTGTCCCAGCAACAGTGC | + |
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Preference number: 6 (lower is better) Translates to: DQQDKDPGMIPS*CSGGPLSQQQC Trigger: GCACTGTTGCTGGGACAGAGGCCCTCCAGAGCACCAGGATGGAATCATCCCCGGATCCTTATCCTGCTGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS TCA 72 bp | CTCTTGCTGGGCCTGGCTCCAGTAGAACAGCCATTGTaGTGTGTGCCTTCACTGTGGCCTCATCCTCACTTC | + |
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Preference number: 6 (lower is better) Translates to: LLLGLAPVEQPL*CVPSLWPHPHF Trigger: GAAGTGAGGATGAGGCCACAGTGAAGGCACACATCACAATGGCTGTTCTACTGGAGCCAGGCCCAGCAAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS CCA 72 bp | CCCCACATGGTGGGTGGGTGGGAGATTGCTGACGGCTaGGTGGGGAAACTGATCAAGGGTCTGAAATATAGT | + |
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Preference number: 6 (lower is better) Translates to: PHMVGGWEIADG*VGKLIKGLKYS Trigger: ACTATATTTCAGACCCTTGATCAGTTTCCCCACCCAGCCGTCAGCAATCTCCCACCCACCCACCATGTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS GCA 72 bp | TGGGCAGCACCGTGTTCTGAGCTCCGAGTGCTCATGTaGTTATTTCTAGGAATTCTCATGAGGAGGCCCGGT | + |
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Preference number: 6 (lower is better) Translates to: WAAPCSELRVLM*LFLGILMRRPG Trigger: ACCGGGCCTCCTCATGAGAATTCCTAGAAATAAGCACATGAGCACTCGGAGCTCAGAACACGGTGCTGCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636296.1 |
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| CDS CAA 90 bp | CATTTGGCGACTTCCTTGCAACACTTTAAGGGAGAGTACAGCACGTaGAAAGCCCCACTGCCCAATGGTCTCTATTGGGTTCCGTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: HLATSLQHFKGEYST*KAPLPNGLYWVPWP Trigger: GGGCCACGGAACCCAATAGAGACCATTGGGCAGTGGGGCTTTCAACGTGCTGTACTCTCCCTTAAAGTGTTGCAAGGAAGTCGCCAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637237.1 |
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| CDS TCA 72 bp | CTTCCTTGCAACACTTTAAGGGAGAGTACAGCACGTTaGAAGCCCCACTGCCCAATGGTCTCTATTGGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LPCNTLRESTAR*KPHCPMVSIGF Trigger: GAACCCAATAGAGACCATTGGGCAGTGGGGCTTTCAACGTGCTGTACTCTCCCTTAAAGTGTTGCAAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637237.1 |
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| CDS CAA 72 bp | ACTTCCTTGCAACACTTTAAGGGAGAGTACAGCACGTaGAAAGCCCCACTGCCCAATGGTCTCTATTGGGTT | + |
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Preference number: 6 (lower is better) Translates to: TSLQHFKGEYST*KAPLPNGLYWV Trigger: AACCCAATAGAGACCATTGGGCAGTGGGGCTTTCAACGTGCTGTACTCTCCCTTAAAGTGTTGCAAGGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637237.1 |
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