Pregenerated sensors for LINC02817 (Homo sapiens)
Ensembl gene IDs: ENSG00000234754Ensembl transcript IDs: ENST00000434398.2, ENST00000439004.1, ENST00000652927.1, ENST00000653714.1, ENST00000656904.1, ENST00000659256.1, ENST00000660437.1, ENST00000660516.1, ENST00000662740.1, ENST00000664578.1, ENST00000665847.1, ENST00000666589.1, ENST00000668399.1, ENST00000670872.1
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTCTTGCGAAAGAGAGGGGCATCCAAATGGGACTTCTGGCCCACGTaGAGTGTACCAGATTTTATAGGCAGGCTGGAGGAGGCGGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: LLRKRGASKWDFWPT*SVPDFIGRLEEAVS Trigger: AGACACCGCCTCCTCCAGCCTGCCTATAAAATCTGGTACACTCCACGTGGGCCAGAAGTCCCATTTGGATGCCCCTCTCTTTCGCAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CCA 90 bp | CAGCTCTCTCTCTTGCGAAAGAGAGGGGCATCCAAATGGGACTTCTaGCCCACGTGGAGTGTACCAGATTTTATAGGCAGGCTGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: QLSLLRKRGASKWDF*PTWSVPDFIGRLEE Trigger: CTCCTCCAGCCTGCCTATAAAATCTGGTACACTCCACGTGGGCCAGAAGTCCCATTTGGATGCCCCTCTCTTTCGCAAGAGAGAGAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS TCA 90 bp | CCTGGCTGCAGTATCCACAAAGAAAAGATGATCTGGGACGTCCTCTaGTCTTGCGTGTGGAGGATCCTTTGCCAGCTTCTGCATTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: PGCSIHKEKMIWDVL*SCVWRILCQLLHSL Trigger: GAGAGAATGCAGAAGCTGGCAAAGGATCCTCCACACGCAAGATCAGAGGACGTCCCAGATCATCTTTTCTTTGTGGATACTGCAGCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000653714.1 ENST00000664578.1 |
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| CDS CCA 90 bp | AAAGGAGAACAGCTCTCTCTCTTGCGAAAGAGAGGGGCATCCAAATaGGACTTCTGGCCCACGTGGAGTGTACCAGATTTTATAGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: KGEQLSLLRKRGASK*DFWPTWSVPDFIGR Trigger: CCTGCCTATAAAATCTGGTACACTCCACGTGGGCCAGAAGTCCCATTTGGATGCCCCTCTCTTTCGCAAGAGAGAGAGCTGTTCTCCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS TCA 90 bp | TGTACACCTGGCTGGCAAAGAGAAGAGAAGACAGAGCTGCCATTTTaGACATGCCTAGTTCCAGGTAGCCTTTTCCTGTTGGCACAACTG | + |
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Preference number: 5 (lower is better) Translates to: CTPGWQREEKTELPF*TCLVPGSLFLLAQL Trigger: CAGTTGTGCCAACAGGAAAAGGCTACCTGGAACTAGGCATGTTCAAAATGGCAGCTCTGTCTTCTCTTCTCTTTGCCAGCCAGGTGTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000660516.1 ENST00000665847.1 ENST00000668399.1 |
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| CDS GCA 90 bp | CTTATTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTTGTCTaGTCCTTACTGTACACCTCACGCAGTTTCCTTTCTCATCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: LIMQTAFPLGQCHVV*SLLYTSRSFLSHQP Trigger: GGGCTGATGAGAAAGGAAACTGCGTGAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAATAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434398.2 ENST00000666589.1 |
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| CDS GCA 90 bp | CTTATTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTTGTCTaGTCCTTACTGTACACCTGGCTGGCAAAGAGAAGAGAAGACAGA | + |
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Preference number: 5 (lower is better) Translates to: LIMQTAFPLGQCHVV*SLLYTWLAKRREDR Trigger: TCTGTCTTCTCTTCTCTTTGCCAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAATAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000660516.1 ENST00000665847.1 ENST00000668399.1 |
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| CDS GCA 90 bp | CTTATTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTTGTCTaGTCCTTACTGTACACCTGGCTCACGCAGTTTCCTTTCTCATCA | + |
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Preference number: 5 (lower is better) Translates to: LIMQTAFPLGQCHVV*SLLYTWLTQFPFSS Trigger: TGATGAGAAAGGAAACTGCGTGAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAATAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000652927.1 ENST00000659256.1 ENST00000660437.1 ENST00000662740.1 |
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| CDS GCA 90 bp | ATGAACACTGATATTTTCCCTCCGTGTGAACATACTTTCATAGGCTaGCCCATGGATGGCTTTGTGATACCTCACGCAGTTTCCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: MNTDIFPPCEHTFIG*PMDGFVIPHAVSFL Trigger: GAGAAAGGAAACTGCGTGAGGTATCACAAAGCCATCCATGGGGCAGCCTATGAAAGTATGTTCACACGGAGGGAAAATATCAGTGTTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000660516.1 ENST00000665847.1 ENST00000668399.1 |
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| CDS GCA 90 bp | CTTATTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTTGTCTaGTCCTTACTGTACACCTGGCTGCAGTATCCACAAAGAAAAGAT | + |
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Preference number: 5 (lower is better) Translates to: LIMQTAFPLGQCHVV*SLLYTWLQYPQRKD Trigger: ATCTTTTCTTTGTGGATACTGCAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAATAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000653714.1 ENST00000664578.1 |
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| CDS CCA 90 bp | CACAGGAAACAGCTCTTCTTGTTGGCAAAATCCAGTTCGGTGGTTTaGAACAGGGTAGACAGAGAAACAAACAAGTGTTTGTTCATAGGC | + |
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Preference number: 5 (lower is better) Translates to: HRKQLFLLAKSSSVV*NRVDRETNKCLFIG Trigger: GCCTATGAACAAACACTTGTTTGTTTCTCTGTCTACCCTGTTCCAAACCACCGAACTGGATTTTGCCAACAAGAAGAGCTGTTTCCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000439004.1 ENST00000652927.1 ENST00000656904.1 ENST00000659256.1 ENST00000660516.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS TCA 90 bp | CTGGGGCACAGTAAAGAGAATAAACATTCTAGATGGCAACCTCTTTaGTGGCAAGTCTTAATTCTAATACTACTCCAAAATGCAAGGCTA | + |
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Preference number: 5 (lower is better) Translates to: LGHSKENKHSRWQPL*WQVLILILLQNARL Trigger: TAGCCTTGCATTTTGGAGTAGTATTAGAATTAAGACTTGCCATCAAAGAGGTTGCCATCTAGAATGTTTATTCTCTTTACTGTGCCCCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000660516.1 ENST00000665847.1 ENST00000668399.1 |
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| CDS CCA 90 bp | ATTAAATGCATAAAGACAGAAAGTAGAATGATAGTTGCCAACAGCTaGGGATTGGAAGAAAGAGTTGTTCTTAATAGACGCAGAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: IKCIKTESRMIVANS*GLEERVVLNRRRAS Trigger: TGAAGCTCTGCGTCTATTAAGAACAACTCTTTCTTCCAATCCCCAGCTGTTGGCAACTATCATTCTACTTTCTGTCTTTATGCATTTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS TCA 72 bp | GCCAGCTTCTGCATTCTCTCTGTCTGCGCAGGACTGTaGGGCATCTCTGGGAAGCCATCAGCTCTCAGGGGC | + |
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Preference number: 6 (lower is better) Translates to: ASFCILSVCAGL*GISGKPSALRG Trigger: GCCCCTGAGAGCTGATGGCTTCCCAGAGATGCCTCACAGTCCTGCGCAGACAGAGAGAATGCAGAAGCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CCA 72 bp | AAGAGAGGGGCATCCAAATGGGACTTCTGGCCCACGTaGAGTGTACCAGATTTTATAGGCAGGCTGGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: KRGASKWDFWPT*SVPDFIGRLEE Trigger: CTCCTCCAGCCTGCCTATAAAATCTGGTACACTCCACGTGGGCCAGAAGTCCCATTTGGATGCCCCTCTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS GCA 72 bp | CAAACAGCCTTTCCACTTGGCCAGTGCCATGTTGTCTaGTCCTTACTGTACACCTGGCTCACGCAGTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: QTAFPLGQCHVV*SLLYTWLTQFP Trigger: AGGAAACTGCGTGAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000652927.1 ENST00000659256.1 ENST00000660437.1 ENST00000662740.1 |
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| CDS CCA 72 bp | CAGCTCTCTCTCTTGCGAAAGAGAGGGGCATCCAAATaGGACTTCTGGCCCACGTGGAGTGTACCAGATTTT | + |
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Preference number: 6 (lower is better) Translates to: QLSLLRKRGASK*DFWPTWSVPDF Trigger: AAAATCTGGTACACTCCACGTGGGCCAGAAGTCCCATTTGGATGCCCCTCTCTTTCGCAAGAGAGAGAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CCA 72 bp | GGCCAGTGCCATGTTGTCTGCTCCTTACTGTACACCTaGCTGGCAAAGAGAAGAGAAGACAGAGCTGCCATT | + |
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Preference number: 6 (lower is better) Translates to: GQCHVVCSLLYT*LAKRREDRAAI Trigger: AATGGCAGCTCTGTCTTCTCTTCTCTTTGCCAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000660516.1 ENST00000665847.1 ENST00000668399.1 |
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| CDS GCA 72 bp | ACAGGGAAGGCAGGCCACCCCATCGTAATCTTATTATaGAAACAGCCTTTCCACTTGGCCAGTGCCATGTTG | + |
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Preference number: 6 (lower is better) Translates to: TGKAGHPIVILL*KQPFHLASAML Trigger: CAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAATAAGATTACGATGGGGTGGCCTGCCTTCCCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS GCA 72 bp | CAAACAGCCTTTCCACTTGGCCAGTGCCATGTTGTCTaGTCCTTACTGTACACCTGGCTGGCAAAGAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: QTAFPLGQCHVV*SLLYTWLAKRR Trigger: TCTTCTCTTTGCCAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000660516.1 ENST00000665847.1 ENST00000668399.1 |
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| CDS GCA 72 bp | CAAACAGCCTTTCCACTTGGCCAGTGCCATGTTGTCTaGTCCTTACTGTACACCTGGCTGCAGTATCCACAA | + |
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Preference number: 6 (lower is better) Translates to: QTAFPLGQCHVV*SLLYTWLQYPQ Trigger: TTGTGGATACTGCAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000653714.1 ENST00000664578.1 |
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| CDS CAA 72 bp | TTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTaGTCTGCTCCTTACTGTACACCTGGCTCACGCAGT | + |
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Preference number: 6 (lower is better) Translates to: LCKQPFHLASAM*SAPYCTPGSRS Trigger: ACTGCGTGAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000652927.1 ENST00000659256.1 ENST00000660437.1 ENST00000662740.1 |
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| CDS GCA 72 bp | CAAACAGCCTTTCCACTTGGCCAGTGCCATGTTGTCTaGTCCTTACTGTACACCTCACGCAGTTTCCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: QTAFPLGQCHVV*SLLYTSRSFLS Trigger: AGAAAGGAAACTGCGTGAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434398.2 ENST00000666589.1 |
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| CDS CCA 72 bp | GGCCAGTGCCATGTTGTCTGCTCCTTACTGTACACCTaGCTGCAGTATCCACAAAGAAAAGATGATCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: GQCHVVCSLLYT*LQYPQRKDDLG Trigger: TCCCAGATCATCTTTTCTTTGTGGATACTGCAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000653714.1 ENST00000664578.1 |
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| CDS CAA 72 bp | CCACAAAGAAAAGATGATCTGGGACGTCCTCTGATCTaGCGTGTGGAGGATCCTTTGCCAGCTTCTGCATTC | + |
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Preference number: 6 (lower is better) Translates to: PQRKDDLGRPLI*RVEDPLPASAF Trigger: GAATGCAGAAGCTGGCAAAGGATCCTCCACACGCAAGATCAGAGGACGTCCCAGATCATCTTTTCTTTGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CAA 72 bp | TTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTaGTCTGCTCCTTACTGTACACCTCACGCAGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: LCKQPFHLASAM*SAPYCTPHAVS Trigger: GGAAACTGCGTGAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434398.2 ENST00000666589.1 |
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| CDS CAA 72 bp | TTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTaGTCTGCTCCTTACTGTACACCTGGCTGGCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: LCKQPFHLASAM*SAPYCTPGWQR Trigger: TCTTTGCCAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000660516.1 ENST00000665847.1 ENST00000668399.1 |
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| CDS CAA 72 bp | TTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTaGTCTGCTCCTTACTGTACACCTGGCTGCAGTATC | + |
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Preference number: 6 (lower is better) Translates to: LCKQPFHLASAM*SAPYCTPGCSI Trigger: GATACTGCAGCCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000653714.1 ENST00000664578.1 |
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| CDS TCA 72 bp | AGTATCCACAAAGAAAAGATGATCTGGGACGTCCTCTaGTCTTGCGTGTGGAGGATCCTTTGCCAGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: SIHKEKMIWDVL*SCVWRILCQLL Trigger: CAGAAGCTGGCAAAGGATCCTCCACACGCAAGATCAGAGGACGTCCCAGATCATCTTTTCTTTGTGGATACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS TCA 72 bp | GGCTGGCAAAGAGAAGAGAAGACAGAGCTGCCATTTTaGACATGCCTAGTTCCAGGTAGCCTTTTCCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: GWQREEKTELPF*TCLVPGSLFLL Trigger: CAACAGGAAAAGGCTACCTGGAACTAGGCATGTTCAAAATGGCAGCTCTGTCTTCTCTTCTCTTTGCCAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000660516.1 ENST00000665847.1 ENST00000668399.1 |
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| CDS GCA 72 bp | GATATTTTCCCTCCGTGTGAACATACTTTCATAGGCTaGCCCATGGATGGCTTTGTGATACCTCACGCAGTT | + |
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Preference number: 6 (lower is better) Translates to: DIFPPCEHTFIG*PMDGFVIPHAV Trigger: AACTGCGTGAGGTATCACAAAGCCATCCATGGGGCAGCCTATGAAAGTATGTTCACACGGAGGGAAAATATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000660516.1 ENST00000665847.1 ENST00000668399.1 |
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| CDS CAA 72 bp | TTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTaGTCTGCTCCTTACTGTACACCTGGTATTTCACGT | + |
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Preference number: 6 (lower is better) Translates to: LCKQPFHLASAM*SAPYCTPGISR Trigger: ACGTGAAATACCAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656904.1 ENST00000670872.1 |
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| CDS CAA 90 bp | GTAATCTTATTATGCAAACAGCCTTTCCACTTGGCCAGTGCCATGTaGTCTGCTCCTTACTGTACACCTCACGCAGTTTCCTTTCTCATC | + |
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Preference number: 6 (lower is better) Translates to: VILLCKQPFHLASAM*SAPYCTPHAVSFLI Trigger: GATGAGAAAGGAAACTGCGTGAGGTGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAATAAGATTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434398.2 ENST00000666589.1 |
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| CDS CAA 72 bp | CCCATCGTAATCTTATTATGCAAACAGCCTTTCCACTaGGCCAGTGCCATGTTGTCTGCTCCTTACTGTACA | + |
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Preference number: 6 (lower is better) Translates to: PIVILLCKQPFH*ASAMLSAPYCT Trigger: TGTACAGTAAGGAGCAGACAACATGGCACTGGCCAAGTGGAAAGGCTGTTTGCATAATAAGATTACGATGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CAA 90 bp | GCACAGGAAACAGCTCTTCTTGTTGGCAAAATCCAGTTCGGTGGTTaGGAACAGGGTAGACAGAGAAACAAACAAGTGTTTGTTCATAGG | + |
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Preference number: 6 (lower is better) Translates to: AQETALLVGKIQFGG*EQGRQRNKQVFVHR Trigger: CCTATGAACAAACACTTGTTTGTTTCTCTGTCTACCCTGTTCCAAACCACCGAACTGGATTTTGCCAACAAGAAGAGCTGTTTCCTGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000439004.1 ENST00000652927.1 ENST00000656904.1 ENST00000659256.1 ENST00000660516.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CAA 72 bp | AGTGGTGTTGTTGTCTGGGGTAAATACCCGGGTTCATaGTCTTGCATCAAGAAGATTAAGGACGTGGACATA | + |
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Preference number: 6 (lower is better) Translates to: SGVVVWGKYPGS*SCIKKIKDVDI Trigger: TATGTCCACGTCCTTAATCTTCTTGATGCAAGACAATGAACCCGGGTATTTACCCCAGACAACAACACCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS TCA 72 bp | CTATCACCTAAGGAGGATGAATTCTGGGTCATTTTATaGACTGTCTTCCTTAGAAAAGCCTCCGAAGCAACT | + |
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Preference number: 6 (lower is better) Translates to: LSPKEDEFWVIL*TVFLRKASEAT Trigger: AGTTGCTTCGGAGGCTTTTCTAAGGAAGACAGTTCATAAAATGACCCAGAATTCATCCTCCTTAGGTGATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000439004.1 ENST00000656904.1 ENST00000659256.1 ENST00000668399.1 |
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| CDS CCA 72 bp | TTTCAAACTGCTGTTGACCATTGGCAATGGAAACTGTaGAAAGTGAAACTGTGGGTGATGGTAAACTACTGT | + |
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Preference number: 6 (lower is better) Translates to: FQTAVDHWQWKL*KVKLWVMVNYC Trigger: ACAGTAGTTTACCATCACCCACAGTTTCACTTTCCACAGTTTCCATTGCCAATGGTCAACAGCAGTTTGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439004.1 |
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| CDS CAA 72 bp | TTTCAAGTTCTTTTAACTCCTAGTGAAGTGGTGTTGTaGTCTGGGGTAAATACCCGGGTTCATTGTCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: FQVLLTPSEVVL*SGVNTRVHCLA Trigger: TGCAAGACAATGAACCCGGGTATTTACCCCAGACAACAACACCACTTCACTAGGAGTTAAAAGAACTTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CAA 72 bp | GCATTTCAAGTTCTTTTAACTCCTAGTGAAGTGGTGTaGTTGTCTGGGGTAAATACCCGGGTTCATTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: AFQVLLTPSEVV*LSGVNTRVHCL Trigger: AAGACAATGAACCCGGGTATTTACCCCAGACAACAACACCACTTCACTAGGAGTTAAAAGAACTTGAAATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CAA 72 bp | ACAGAAAGTAGAATGATAGTTGCCAACAGCTGGGGATaGGAAGAAAGAGTTGTTCTTAATAGACGCAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: TESRMIVANSWG*EERVVLNRRRA Trigger: AGCTCTGCGTCTATTAAGAACAACTCTTTCTTCCAATCCCCAGCTGTTGGCAACTATCATTCTACTTTCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CCA 72 bp | GACCATTGGCAATGGAAACTGTGGAAAGTGAAACTGTaGGTGATGGTAAACTACTGTGTTTGGAGAAATAAT | + |
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Preference number: 6 (lower is better) Translates to: DHWQWKLWKVKL*VMVNYCVWRNN Trigger: ATTATTTCTCCAAACACAGTAGTTTACCATCACCCACAGTTTCACTTTCCACAGTTTCCATTGCCAATGGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439004.1 |
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| CDS CAA 90 bp | ACGCAGAGCTTCAGTTTGGGAAACTTAAAAAGTTCTGAAGAAGGATaGCCCAACAATGTGAATGTACTTAACACTACTGGACTGTACATT | + |
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Preference number: 6 (lower is better) Translates to: TQSFSLGNLKSSEEG*PNNVNVLNTTGLYI Trigger: AATGTACAGTCCAGTAGTGTTAAGTACATTCACATTGTTGGGCAATCCTTCTTCAGAACTTTTTAAGTTTCCCAAACTGAAGCTCTGCGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 14 transcripts: ENST00000434398.2 ENST00000439004.1 ENST00000652927.1 ENST00000653714.1 ENST00000656904.1 ENST00000659256.1 ENST00000660437.1 ENST00000660516.1 ENST00000662740.1 ENST00000664578.1 ENST00000665847.1 ENST00000666589.1 ENST00000668399.1 ENST00000670872.1 |
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| CDS CAA 72 bp | GTGTTTGGAGAAATAATGACCCCAAACTGCCCAAATTaGAGAAAAGACATGAATCTACAAATACAAGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: VFGEIMTPNCPN*RKDMNLQIQEA Trigger: AGCTTCTTGTATTTGTAGATTCATGTCTTTTCTCAAATTTGGGCAGTTTGGGGTCATTATTTCTCCAAACAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439004.1 |
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