Pregenerated sensors for LINC02791 (Homo sapiens)
Ensembl gene IDs: ENSG00000235446Ensembl transcript IDs: ENST00000439878.1, ENST00000650525.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACAGCTCTCATACTCCAGGCTCAAAATTTTACTGTTGTTGAGAACTaGCCTATGTCAAGATGTCTGTGTACAATTATTAGGTTATTTGCA | + |
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Preference number: 5 (lower is better) Translates to: TALILQAQNFTVVEN*PMSRCLCTIIRLFA Trigger: TGCAAATAACCTAATAATTGTACACAGACATCTTGACATAGGCCAGTTCTCAACAACAGTAAAATTTTGAGCCTGGAGTATGAGAGCTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650525.1 |
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| CDS CCA 72 bp | GGGAGAGGGATGCCTTCAAATATCTTGAGCAATGCGTaGATCTTGAATACTACTAATTCATCACCATTGGGA | + |
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Preference number: 6 (lower is better) Translates to: GRGMPSNILSNA*ILNTTNSSPLG Trigger: TCCCAATGGTGATGAATTAGTAGTATTCAAGATCCACGCATTGCTCAAGATATTTGAAGGCATCCCTCTCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650525.1 |
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| CDS CAA 72 bp | CAGCTCTCATACTCCAGGCTCAAAATTTTACTGTTGTaGAGAACTGGCCTATGTCAAGATGTCTGTGTACAA | + |
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Preference number: 6 (lower is better) Translates to: QLSYSRLKILLL*RTGLCQDVCVQ Trigger: TTGTACACAGACATCTTGACATAGGCCAGTTCTCAACAACAGTAAAATTTTGAGCCTGGAGTATGAGAGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650525.1 |
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| CDS CAA 72 bp | CTACAGCTCTCATACTCCAGGCTCAAAATTTTACTGTaGTTGAGAACTGGCCTATGTCAAGATGTCTGTGTA | + |
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Preference number: 6 (lower is better) Translates to: LQLSYSRLKILL*LRTGLCQDVCV Trigger: TACACAGACATCTTGACATAGGCCAGTTCTCAACAACAGTAAAATTTTGAGCCTGGAGTATGAGAGCTGTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650525.1 |
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| CDS TCA 72 bp | AGCTCTCATACTCCAGGCTCAAAATTTTACTGTTGTTaGGAACTGGCCTATGTCAAGATGTCTGTGTACAAT | + |
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Preference number: 6 (lower is better) Translates to: SSHTPGSKFYCC*ELAYVKMSVYN Trigger: ATTGTACACAGACATCTTGACATAGGCCAGTTCTCAACAACAGTAAAATTTTGAGCCTGGAGTATGAGAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650525.1 |
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| CDS CAA 72 bp | TTCTTCATGCTAGGGAGAGGGATGCCTTCAAATATCTaGAGCAATGCGTGGATCTTGAATACTACTAATTCA | + |
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Preference number: 6 (lower is better) Translates to: FFMLGRGMPSNI*SNAWILNTTNS Trigger: TGAATTAGTAGTATTCAAGATCCACGCATTGCTCAAGATATTTGAAGGCATCCCTCTCCCTAGCATGAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650525.1 |
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| CDS CAA 90 bp | TCCTTTCTACAGCTCTCATACTCCAGGCTCAAAATTTTACTGTTGTaGAGAACTGGCCTATGTCAAGATGTCTGTGTACAATTATTAGGT | + |
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Preference number: 6 (lower is better) Translates to: SFLQLSYSRLKILLL*RTGLCQDVCVQLLG Trigger: ACCTAATAATTGTACACAGACATCTTGACATAGGCCAGTTCTCAACAACAGTAAAATTTTGAGCCTGGAGTATGAGAGCTGTAGAAAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650525.1 |
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| CDS CAA 90 bp | CTGTCCTTTCTACAGCTCTCATACTCCAGGCTCAAAATTTTACTGTaGTTGAGAACTGGCCTATGTCAAGATGTCTGTGTACAATTATTA | + |
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Preference number: 6 (lower is better) Translates to: LSFLQLSYSRLKILL*LRTGLCQDVCVQLL Trigger: TAATAATTGTACACAGACATCTTGACATAGGCCAGTTCTCAACAACAGTAAAATTTTGAGCCTGGAGTATGAGAGCTGTAGAAAGGACAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650525.1 |
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| CDS CCA 72 bp | ATACTACTAATTCATCACCATTGGGAACCTGTATTCTaGATTGTCTTCAGTAGTGCTGTTTCCATTCATAAA | + |
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Preference number: 6 (lower is better) Translates to: ILLIHHHWEPVF*IVFSSAVSIHK Trigger: TTTATGAATGGAAACAGCACTACTGAAGACAATCCAGAATACAGGTTCCCAATGGTGATGAATTAGTAGTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650525.1 |
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| CDS CAA 72 bp | GGTTCATCCCGTCAGTTAAATAGAGGAGTATTTACTTaGCAAGAGGCAATAAATGATATTCCTTTTCTCTTA | + |
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Preference number: 6 (lower is better) Translates to: GSSRQLNRGVFT*QEAINDIPFLL Trigger: TAAGAGAAAAGGAATATCATTTATTGCCTCTTGCAAAGTAAATACTCCTCTATTTAACTGACGGGATGAACC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439878.1 ENST00000650525.1 |
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