Pregenerated sensors for LINC02742 (Homo sapiens)
Ensembl gene IDs: ENSG00000249867Ensembl transcript IDs: ENST00000511073.2, ENST00000513853.5, ENST00000662190.1, ENST00000666135.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAATATGCTCACTTATCTGCCTTCCCCACTGGACTGTTGATTCCATaGAGACTGGGCATATTGCAACATTATTCACCATTATATCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: EYAHLSAFPTGLLIP*RLGILQHYSPLYLQ Trigger: CTGGAGATATAATGGTGAATAATGTTGCAATATGCCCAGTCTTCATGGAATCAACAGTCCAGTGGGGAAGGCAGATAAGTGAGCATATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS TCA 90 bp | AGTAGAAGGAATATGCTCACTTATCTGCCTTCCCCACTGGACTGTTaGTTCCATGAAGACTGGGCATATTGCAACATTATTCACCATTAT | + |
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Preference number: 5 (lower is better) Translates to: SRRNMLTYLPSPLDC*FHEDWAYCNIIHHY Trigger: ATAATGGTGAATAATGTTGCAATATGCCCAGTCTTCATGGAATCAACAGTCCAGTGGGGAAGGCAGATAAGTGAGCATATTCCTTCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS TCA 90 bp | TTGTGTATGTTGAACCAGCCTTGCATCCCAGGGATGAAGCCAACTTaGAAGTGGAGGATAAAATTTTTGATGTACTGCTGGATTTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: LCMLNQPCIPGMKPT*KWRIKFLMYCWIWF Trigger: AAACCAAATCCAGCAGTACATCAAAAATTTTATCCTCCACTTTCAAGTTGGCTTCATCCCTGGGATGCAAGGCTGGTTCAACATACACAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662190.1 |
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| CDS TCA 90 bp | TATACTATCATGTCATCTGCAAACAGAGACAATTTGACTTCCTCTTaGATACCCCTTATTTCTTTTTCTTGCCGATTGCCCTGGCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: YTIMSSANRDNLTSS*IPLISFSCRLPWPE Trigger: TTCTGGCCAGGGCAATCGGCAAGAAAAAGAAATAAGGGGTATTCAAGAGGAAGTCAAATTGTCTCTGTTTGCAGATGACATGATAGTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662190.1 |
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| CDS GCA 90 bp | GGGCATATTGCAACATTATTCACCATTATATCTCCAGCACCCTTCTaGTTTTTATCTTCCATCTTTTCTTCTCTTATTCATGCTCTTGTA | + |
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Preference number: 5 (lower is better) Translates to: GHIATLFTIISPAPF*FLSSIFSSLIHALV Trigger: TACAAGAGCATGAATAAGAGAAGAAAAGATGGAAGATAAAAAGCAGAAGGGTGCTGGAGATATAATGGTGAATAATGTTGCAATATGCCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000511073.2 |
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| CDS GCA 90 bp | GTATGCTTATACGAACATCCTAGAGTATGTTTACATCATAGAGTATaGTTGCATATAGTTGTGCAAGCATTGTGGAGTATGCTTACACAA | + |
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Preference number: 5 (lower is better) Translates to: VCLYEHPRVCLHHRV*LHIVVQALWSMLTQ Trigger: TTGTGTAAGCATACTCCACAATGCTTGCACAACTATATGCAAGCATACTCTATGATGTAAACATACTCTAGGATGTTCGTATAAGCATAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS CCA 90 bp | TGTTTACATCATAGAGTATGCTTGCATATAGTTGTGCAAGCATTGTaGAGTATGCTTACACAAACCTATACACACCTAGGTTATATGGTA | + |
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Preference number: 5 (lower is better) Translates to: CLHHRVCLHIVVQAL*SMLTQTYTHLGYMV Trigger: TACCATATAACCTAGGTGTGTATAGGTTTGTGTAAGCATACTCCACAATGCTTGCACAACTATATGCAAGCATACTCTATGATGTAAACA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS CAA 90 bp | CTCAGGTTCAGGATCATCCATATCACTGTCTTCCATCTCCTCATCTaGTCCCACTGGTCTTCAGGGAAAATGATACTCATGGAGCTATCA | + |
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Preference number: 6 (lower is better) Translates to: LRFRIIHITVFHLLI*SHWSSGKMILMELS Trigger: TGATAGCTCCATGAGTATCATTTTCCCTGAAGACCAGTGGGACAAGATGAGGAGATGGAAGACAGTGATATGGATGATCCTGAACCTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS TCA 72 bp | TTGAACCAGCCTTGCATCCCAGGGATGAAGCCAACTTaGAAGTGGAGGATAAAATTTTTGATGTACTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LNQPCIPGMKPT*KWRIKFLMYCW Trigger: CCAGCAGTACATCAAAAATTTTATCCTCCACTTTCAAGTTGGCTTCATCCCTGGGATGCAAGGCTGGTTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662190.1 |
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| CDS CCA 72 bp | CATATCACTGTCTTCCATCTCCTCATCTTGTCCCACTaGTCTTCAGGGAAAATGATACTCATGGAGCTATCA | + |
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Preference number: 6 (lower is better) Translates to: HITVFHLLILSH*SSGKMILMELS Trigger: TGATAGCTCCATGAGTATCATTTTCCCTGAAGACCAGTGGGACAAGATGAGGAGATGGAAGACAGTGATATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS TCA 72 bp | CACTTATCTGCCTTCCCCACTGGACTGTTGATTCCATaGAGACTGGGCATATTGCAACATTATTCACCATTA | + |
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Preference number: 6 (lower is better) Translates to: HLSAFPTGLLIP*RLGILQHYSPL Trigger: TAATGGTGAATAATGTTGCAATATGCCCAGTCTTCATGGAATCAACAGTCCAGTGGGGAAGGCAGATAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS TCA 72 bp | CCAGAGCCACAGAGAAGGATAAAGAGAACAGCTCTCTaGAAGTCCTCCTACAAACTACAGGAAATAAAATCA | + |
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Preference number: 6 (lower is better) Translates to: PEPQRRIKRTAL*KSSYKLQEIKS Trigger: TGATTTTATTTCCTGTAGTTTGTAGGAGGACTTTCAGAGAGCTGTTCTCTTTATCCTTCTCTGTGGCTCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000513853.5 ENST00000662190.1 |
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| CDS CAA 72 bp | TTTGACTTCCTCTTGAATACCCCTTATTTCTTTTTCTaGCCGATTGCCCTGGCCAGAACTTTCAACACTATG | + |
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Preference number: 6 (lower is better) Translates to: FDFLLNTPYFFF*PIALARTFNTM Trigger: CATAGTGTTGAAAGTTCTGGCCAGGGCAATCGGCAAGAAAAAGAAATAAGGGGTATTCAAGAGGAAGTCAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662190.1 |
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| CDS CAA 90 bp | TTTGTGTATGTTGAACCAGCCTTGCATCCCAGGGATGAAGCCAACTaGAAAGTGGAGGATAAAATTTTTGATGTACTGCTGGATTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: FVYVEPALHPRDEAN*KVEDKIFDVLLDLV Trigger: AACCAAATCCAGCAGTACATCAAAAATTTTATCCTCCACTTTCAAGTTGGCTTCATCCCTGGGATGCAAGGCTGGTTCAACATACACAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662190.1 |
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| CDS CAA 90 bp | CAGAGACAATTTGACTTCCTCTTGAATACCCCTTATTTCTTTTTCTaGCCGATTGCCCTGGCCAGAACTTTCAACACTATGTTGAATAGG | + |
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Preference number: 6 (lower is better) Translates to: QRQFDFLLNTPYFFF*PIALARTFNTMLNR Trigger: CCTATTCAACATAGTGTTGAAAGTTCTGGCCAGGGCAATCGGCAAGAAAAAGAAATAAGGGGTATTCAAGAGGAAGTCAAATTGTCTCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662190.1 |
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| CDS CAA 90 bp | ATATACTATCATGTCATCTGCAAACAGAGACAATTTGACTTCCTCTaGAATACCCCTTATTTCTTTTTCTTGCCGATTGCCCTGGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: IYYHVICKQRQFDFL*NTPYFFFLPIALAR Trigger: TCTGGCCAGGGCAATCGGCAAGAAAAAGAAATAAGGGGTATTCAAGAGGAAGTCAAATTGTCTCTGTTTGCAGATGACATGATAGTATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662190.1 |
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| CDS TCA 72 bp | ATGTCATCTGCAAACAGAGACAATTTGACTTCCTCTTaGATACCCCTTATTTCTTTTTCTTGCCGATTGCCC | + |
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Preference number: 6 (lower is better) Translates to: MSSANRDNLTSS*IPLISFSCRLP Trigger: GGGCAATCGGCAAGAAAAAGAAATAAGGGGTATTCAAGAGGAAGTCAAATTGTCTCTGTTTGCAGATGACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662190.1 |
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| CDS TCA 72 bp | TGTCTTTGTTCTGTTTATGTGATGGATTACGTTTATTaGTTTGTGTATGTTGAACCAGCCTTGCATCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: CLCSVYVMDYVY*FVYVEPALHPR Trigger: CCTGGGATGCAAGGCTGGTTCAACATACACAAATCAATAAACGTAATCCATCACATAAACAGAACAAAGACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662190.1 |
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| CDS CAA 72 bp | CATCATAGAGTATGCTTGCATATAGTTGTGCAAGCATaGTGGAGTATGCTTACACAAACCTATACACACCTA | + |
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Preference number: 6 (lower is better) Translates to: HHRVCLHIVVQA*WSMLTQTYTHL Trigger: TAGGTGTGTATAGGTTTGTGTAAGCATACTCCACAATGCTTGCACAACTATATGCAAGCATACTCTATGATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS CAA 90 bp | TGCTTATACGAACATCCTAGAGTATGTTTACATCATAGAGTATGCTaGCATATAGTTGTGCAAGCATTGTGGAGTATGCTTACACAAACC | + |
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Preference number: 6 (lower is better) Translates to: CLYEHPRVCLHHRVC*HIVVQALWSMLTQT Trigger: GGTTTGTGTAAGCATACTCCACAATGCTTGCACAACTATATGCAAGCATACTCTATGATGTAAACATACTCTAGGATGTTCGTATAAGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS CAA 72 bp | TGTACCCCATATTTCGGTACTGAATACTGTAGGCAATaGTTACACAGTGGTATTTGTGTATCTAAACAAGCA | + |
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Preference number: 6 (lower is better) Translates to: CTPYFGTEYCRQ*LHSGICVSKQA Trigger: TGCTTGTTTAGATACACAAATACCACTGTGTAACAATTGCCTACAGTATTCAGTACCGAAATATGGGGTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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| CDS CAA 90 bp | GTATGTTTACATCATAGAGTATGCTTGCATATAGTTGTGCAAGCATaGTGGAGTATGCTTACACAAACCTATACACACCTAGGTTATATG | + |
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Preference number: 6 (lower is better) Translates to: VCLHHRVCLHIVVQA*WSMLTQTYTHLGYM Trigger: CATATAACCTAGGTGTGTATAGGTTTGTGTAAGCATACTCCACAATGCTTGCACAACTATATGCAAGCATACTCTATGATGTAAACATAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000511073.2 ENST00000666135.1 |
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