Pregenerated sensors for LINC02736 (Homo sapiens)
Ensembl gene IDs: ENSG00000279243Ensembl transcript IDs: ENST00000622944.2, ENST00000650251.2, ENST00000660598.1, ENST00000666139.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCAGGACCTGCTGTCTCCAGGACCCCTAAGTTTCTAGGCCAGAGCTaGCGGCTGGTGGGTGCAGTCAGCCAGGCTCCAGGGAAGGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: AGPAVSRTPKFLGQS*RLVGAVSQAPGKAA Trigger: AGCAGCCTTCCCTGGAGCCTGGCTGACTGCACCCACCAGCCGTCAGCTCTGGCCTAGAAACTTAGGGGTCCTGGAGACAGCAGGTCCTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666139.1 |
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| CDS TCA 90 bp | CAGCTTCCAGCAGGTTCTCTGCCTCCGCCTGCTCCAATGCAGGGGTaGAGTCACTGCCAACGTTTAACCCTTTCCCCACGTGGGCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: QLPAGSLPPPAPMQG*SHCQRLTLSPRGPG Trigger: GCCAGGCCCACGTGGGGAAAGGGTTAAACGTTGGCAGTGACTTCACCCCTGCATTGGAGCAGGCGGAGGCAGAGAACCTGCTGGAAGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666139.1 |
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| CDS GCA 90 bp | CCCCACGTGGGCCTGGCTCCAGTCAGATCGAGGGTCTGGGAGGGCTaGAGGGATCTCTCAGTCGCCAATGGTTGCAGACAATCCAGTAAG | + |
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Preference number: 5 (lower is better) Translates to: PHVGLAPVRSRVWEG*RDLSVANGCRQSSK Trigger: CTTACTGGATTGTCTGCAACCATTGGCGACTGAGAGATCCCTGCAGCCCTCCCAGACCCTCGATCTGACTGGAGCCAGGCCCACGTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS CCA 90 bp | GGGGTGAAGTCACTGCCAACGTTTAACCCTTTCCCCACGTGGGCCTaGCTCCAGTCAGATCGAGGGTCTGGGAGGGCTGCAGGGATCTCT | + |
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Preference number: 5 (lower is better) Translates to: GVKSLPTFNPFPTWA*LQSDRGSGRAAGIS Trigger: AGAGATCCCTGCAGCCCTCCCAGACCCTCGATCTGACTGGAGCCAGGCCCACGTGGGGAAAGGGTTAAACGTTGGCAGTGACTTCACCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS CCA 90 bp | AATGCAGGGGTGAAGTCACTGCCAACGTTTAACCCTTTCCCCACGTaGGCCTGGCTCCAGTCAGATCGAGGGTCTGGGAGGGCTGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: NAGVKSLPTFNPFPT*AWLQSDRGSGRAAG Trigger: CCCTGCAGCCCTCCCAGACCCTCGATCTGACTGGAGCCAGGCCCACGTGGGGAAAGGGTTAAACGTTGGCAGTGACTTCACCCCTGCATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS TCA 90 bp | TTCCAGCAGGTTCCTACTCTGCCTCCGCCTGCTCCAATGCAGGGGTaGAGTCACTGCCAACGTTTAACCCTTTCCCCACGTGGGCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: FQQVPTLPPPAPMQG*SHCQRLTLSPRGPG Trigger: GCCAGGCCCACGTGGGGAAAGGGTTAAACGTTGGCAGTGACTTCACCCCTGCATTGGAGCAGGCGGAGGCAGAGTAGGAACCTGCTGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000622944.2 ENST00000650251.2 |
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| CDS CCA 90 bp | TGTCCTCAGCCAATCTCCCACCAGATTTCGGTGGCAAGAGGAAGGTaGCAGCCAATGAAGAGGCTCGGAGCTTGCATCATCCTCCTGACC | + |
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Preference number: 5 (lower is better) Translates to: CPQPISHQISVARGR*QPMKRLGACIILLT Trigger: GGTCAGGAGGATGATGCAAGCTCCGAGCCTCTTCATTGGCTGCCACCTTCCTCTTGCCACCGAAATCTGGTGGGAGATTGGCTGAGGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660598.1 |
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| CDS GCA 90 bp | TCGAGGGTCTGGGAGGGCTGCAGGGATCTCTCAGTCGCCAATGGTTaGAGACAATCCAGTAAGCCACAGCTGTTACTTGCTGCACTGAAC | + |
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Preference number: 5 (lower is better) Translates to: SRVWEGCRDLSVANG*RQSSKPQLLLAALN Trigger: GTTCAGTGCAGCAAGTAACAGCTGTGGCTTACTGGATTGTCTGCAACCATTGGCGACTGAGAGATCCCTGCAGCCCTCCCAGACCCTCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS TCA 90 bp | ATGGTTGCAGACAATCCAGTAAGCCACAGCTGTTACTTGCTGCACTaGACCCTGCCTGCGCTGAGTACCGAAAGCAGGAGGGAAGGTAGC | + |
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Preference number: 5 (lower is better) Translates to: MVADNPVSHSCYLLH*TLPALSTESRREGS Trigger: GCTACCTTCCCTCCTGCTTTCGGTACTCAGCGCAGGCAGGGTTCAGTGCAGCAAGTAACAGCTGTGGCTTACTGGATTGTCTGCAACCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS CCA 90 bp | GCAGTTGCTATGGCAACATCTTTGGCAGCTATTTTCATCCTTCTCTaGTTCAGAACAGCTTCCAGCAGGTTCTCTGCCTCCGCCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: AVAMATSLAAIFILL*FRTASSRFSASACS Trigger: GGAGCAGGCGGAGGCAGAGAACCTGCTGGAAGCTGTTCTGAACCAGAGAAGGATGAAAATAGCTGCCAAAGATGTTGCCATAGCAACTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666139.1 |
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| CDS CCA 90 bp | GCAGTTGCTATGGCAACATCTTTGGCAGCTATTTTCATCCTTCTCTaGTTCAGAACAGCTTCCAGCAGGTTCCTACTCTGCCTCCGCCTG | + |
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Preference number: 5 (lower is better) Translates to: AVAMATSLAAIFILL*FRTASSRFLLCLRL Trigger: CAGGCGGAGGCAGAGTAGGAACCTGCTGGAAGCTGTTCTGAACCAGAGAAGGATGAAAATAGCTGCCAAAGATGTTGCCATAGCAACTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000622944.2 ENST00000650251.2 |
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| CDS TCA 90 bp | GATGAGTTGGTAACCAAAGCCATGGGTAGAGGCACAGAAATTCCTTaGCTACTCTGGAAAATGAGGGAGTTCACTTCCAAGGAGGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: DELVTKAMGRGTEIP*LLWKMREFTSKEVR Trigger: CCTGACCTCCTTGGAAGTGAACTCCCTCATTTTCCAGAGTAGTCAAGGAATTTCTGTGCCTCTACCCATGGCTTTGGTTACCAACTCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS GCA 90 bp | GCATTTGCAAAGTTGGAGCCTTACTCCAGCCTAGAAGGTGGTGAGTaGTGGAATGAATATTCCATTTCACAGAAAGAAACCAAGGCCCCC | + |
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Preference number: 5 (lower is better) Translates to: AFAKLEPYSSLEGGE*WNEYSISQKETKAP Trigger: GGGGGCCTTGGTTTCTTTCTGTGAAATGGAATATTCATTCCAGCACTCACCACCTTCTAGGCTGGAGTAAGGCTCCAACTTTGCAAATGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS CCA 90 bp | TTTGCAAAGTTGGAGCCTTACTCCAGCCTAGAAGGTGGTGAGTGCTaGAATGAATATTCCATTTCACAGAAAGAAACCAAGGCCCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: FAKLEPYSSLEGGEC*NEYSISQKETKAPR Trigger: CCTGGGGGCCTTGGTTTCTTTCTGTGAAATGGAATATTCATTCCAGCACTCACCACCTTCTAGGCTGGAGTAAGGCTCCAACTTTGCAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS CCA 90 bp | TTCCAAGGAGGTCAGGAAGGAAAGCAGTTGCTATGGCAACATCTTTaGCAGCTATTTTCATCCTTCTCTGGTTCAGAACAGCTTCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: FQGGQEGKQLLWQHL*QLFSSFSGSEQLPA Trigger: TGCTGGAAGCTGTTCTGAACCAGAGAAGGATGAAAATAGCTGCCAAAGATGTTGCCATAGCAACTGCTTTCCTTCCTGACCTCCTTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS TCA 90 bp | GATGAGTTGGTAACCAAAGCCATGGGTAGAGGCACAGAAATTCCTTaGCTACTCTGGAAAATGAGGGAGTTCACCTTCAAGAGAAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: DELVTKAMGRGTEIP*LLWKMREFTFKRRK Trigger: CTTTCTTCTCTTGAAGGTGAACTCCCTCATTTTCCAGAGTAGTCAAGGAATTTCTGTGCCTCTACCCATGGCTTTGGTTACCAACTCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622944.2 |
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| CDS GCA 90 bp | AAAATGAGGGAGTTCACTTCCAAGGAGGTCAGGAAGGAAAGCAGTTaGTATGGCAACATCTTTGGCAGCTATTTTCATCCTTCTCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: KMREFTSKEVRKESS*YGNIFGSYFHPSLV Trigger: AACCAGAGAAGGATGAAAATAGCTGCCAAAGATGTTGCCATAGCAACTGCTTTCCTTCCTGACCTCCTTGGAAGTGAACTCCCTCATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS GCA 90 bp | CAAAGTCAACTACTAACTTCCAAGGAGGTCAGGAAGGAAAGCAGTTaGTATGGCAACATCTTTGGCAGCTATTTTCATCCTTCTCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: QSQLLTSKEVRKESS*YGNIFGSYFHPSLV Trigger: AACCAGAGAAGGATGAAAATAGCTGCCAAAGATGTTGCCATAGCAACTGCTTTCCTTCCTGACCTCCTTGGAAGTTAGTAGTTGACTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622944.2 |
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| CDS GCA 90 bp | AAGAGAAGAAAGTTAGGTCAGTATAAAATGGCTGACAGCCTCTTCTaGCTTCAGAAAAGTACTTCAACTGCAAAGTCAACTACTAACTTC | + |
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Preference number: 5 (lower is better) Translates to: KRRKLGQYKMADSLF*LQKSTSTAKSTTNF Trigger: GAAGTTAGTAGTTGACTTTGCAGTTGAAGTACTTTTCTGAAGGCAGAAGAGGCTGTCAGCCATTTTATACTGACCTAACTTTCTTCTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000622944.2 |
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| CDS CCA 72 bp | CCCCACGTGGGCCTGGCTCCAGTCAGATCGAGGGTCTaGGAGGGCTGCAGGGATCTCTCAGTCGCCAATGGT | + |
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Preference number: 6 (lower is better) Translates to: PHVGLAPVRSRV*EGCRDLSVANG Trigger: ACCATTGGCGACTGAGAGATCCCTGCAGCCCTCCCAGACCCTCGATCTGACTGGAGCCAGGCCCACGTGGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS GCA 72 bp | GGCCTGGCTCCAGTCAGATCGAGGGTCTGGGAGGGCTaGAGGGATCTCTCAGTCGCCAATGGTTGCAGACAA | + |
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Preference number: 6 (lower is better) Translates to: GLAPVRSRVWEG*RDLSVANGCRQ Trigger: TTGTCTGCAACCATTGGCGACTGAGAGATCCCTGCAGCCCTCCCAGACCCTCGATCTGACTGGAGCCAGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS GCA 72 bp | ACCGATGTTGCAGAACACCTGGGGCGGAGTAGGGAGTaGCAAAGCGCAGGGGATGAGTGCACAGCAGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: TDVAEHLGRSRE*QSAGDECTAGR Trigger: TCTCCCTGCTGTGCACTCATCCCCTGCGCTTTGGCACTCCCTACTCCGCCCCAGGTGTTCTGCAACATCGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666139.1 |
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| CDS CCA 72 bp | TCACTGCCAACGTTTAACCCTTTCCCCACGTGGGCCTaGCTCCAGTCAGATCGAGGGTCTGGGAGGGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SLPTFNPFPTWA*LQSDRGSGRAA Trigger: TGCAGCCCTCCCAGACCCTCGATCTGACTGGAGCCAGGCCCACGTGGGGAAAGGGTTAAACGTTGGCAGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS CCA 72 bp | GTGAAGTCACTGCCAACGTTTAACCCTTTCCCCACGTaGGCCTGGCTCCAGTCAGATCGAGGGTCTGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: VKSLPTFNPFPT*AWLQSDRGSGR Trigger: CCTCCCAGACCCTCGATCTGACTGGAGCCAGGCCCACGTGGGGAAAGGGTTAAACGTTGGCAGTGACTTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS CAA 90 bp | TTCGGTGGCAAGAGGAAGGTGGCAGCCAATGAAGAGGCTCGGAGCTaGCATCATCCTCCTGACCAGGGTGGAATAACCAGGAGGCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: FGGKRKVAANEEARS*HHPPDQGGITRRQA Trigger: CGCCTGCCTCCTGGTTATTCCACCCTGGTCAGGAGGATGATGCAAGCTCCGAGCCTCTTCATTGGCTGCCACCTTCCTCTTGCCACCGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660598.1 |
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| CDS TCA 72 bp | AGTACCGAAAGCAGGAGGGAAGGTAGCCACATCTCTTaGGCCCGGCGCTGTCCTAAGCTCCTGACATCCCCA | + |
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Preference number: 6 (lower is better) Translates to: STESRREGSHIS*ARRCPKLLTSP Trigger: TGGGGATGTCAGGAGCTTAGGACAGCGCCGGGCTCAAGAGATGTGGCTACCTTCCCTCCTGCTTTCGGTACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS TCA 72 bp | GCAGGTTCTCTGCCTCCGCCTGCTCCAATGCAGGGGTaGAGTCACTGCCAACGTTTAACCCTTTCCCCACGT | + |
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Preference number: 6 (lower is better) Translates to: AGSLPPPAPMQG*SHCQRLTLSPR Trigger: ACGTGGGGAAAGGGTTAAACGTTGGCAGTGACTTCACCCCTGCATTGGAGCAGGCGGAGGCAGAGAACCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666139.1 |
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| CDS TCA 72 bp | ACAGCTGTTACTTGCTGCACTGAACCCTGCCTGCGCTaGGTACCGAAAGCAGGAGGGAAGGTAGCCACATCT | + |
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Preference number: 6 (lower is better) Translates to: TAVTCCTEPCLR*VPKAGGKVATS Trigger: AGATGTGGCTACCTTCCCTCCTGCTTTCGGTACTCAGCGCAGGCAGGGTTCAGTGCAGCAAGTAACAGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS TCA 72 bp | GACAATCCAGTAAGCCACAGCTGTTACTTGCTGCACTaGACCCTGCCTGCGCTGAGTACCGAAAGCAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: DNPVSHSCYLLH*TLPALSTESRR Trigger: CCTCCTGCTTTCGGTACTCAGCGCAGGCAGGGTTCAGTGCAGCAAGTAACAGCTGTGGCTTACTGGATTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS GCA 72 bp | TTCAGAACAGCTTCCAGCAGGTTCTCTGCCTCCGCCTaGTCCAATGCAGGGGTGAAGTCACTGCCAACGTTT | + |
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Preference number: 6 (lower is better) Translates to: FRTASSRFSASA*SNAGVKSLPTF Trigger: AAACGTTGGCAGTGACTTCACCCCTGCATTGGAGCAGGCGGAGGCAGAGAACCTGCTGGAAGCTGTTCTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666139.1 |
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| CDS CCA 72 bp | CCAATCTCCCACCAGATTTCGGTGGCAAGAGGAAGGTaGCAGCCAATGAAGAGGCTCGGAGCTTGCATCATC | + |
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Preference number: 6 (lower is better) Translates to: PISHQISVARGR*QPMKRLGACII Trigger: GATGATGCAAGCTCCGAGCCTCTTCATTGGCTGCCACCTTCCTCTTGCCACCGAAATCTGGTGGGAGATTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660598.1 |
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| CDS CAA 72 bp | AAGAGGAAGGTGGCAGCCAATGAAGAGGCTCGGAGCTaGCATCATCCTCCTGACCAGGGTGGAATAACCAGG | + |
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Preference number: 6 (lower is better) Translates to: KRKVAANEEARS*HHPPDQGGITR Trigger: CCTGGTTATTCCACCCTGGTCAGGAGGATGATGCAAGCTCCGAGCCTCTTCATTGGCTGCCACCTTCCTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660598.1 |
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| CDS GCA 72 bp | TGGGAGGGCTGCAGGGATCTCTCAGTCGCCAATGGTTaGAGACAATCCAGTAAGCCACAGCTGTTACTTGCT | + |
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Preference number: 6 (lower is better) Translates to: WEGCRDLSVANG*RQSSKPQLLLA Trigger: AGCAAGTAACAGCTGTGGCTTACTGGATTGTCTGCAACCATTGGCGACTGAGAGATCCCTGCAGCCCTCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000666139.1 |
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| CDS CCA 72 bp | ACGGTTCAGCTTTTAGAACTGGCCAGGTTGGAATTCTaGCTGGGGGCAGACAGGGAGGGCAAACCACAAACA | + |
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Preference number: 6 (lower is better) Translates to: TVQLLELARLEF*LGADREGKPQT Trigger: TGTTTGTGGTTTGCCCTCCCTGTCTGCCCCCAGCCAGAATTCCAACCTGGCCAGTTCTAAAAGCTGAACCGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666139.1 |
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| CDS CAA 72 bp | ACGGAGCTCTACAGTTTACTAACAGCATTTGCAAAGTaGGAGCCTTACTCCAGCCTAGAAGGTGGTGAGTGC | + |
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Preference number: 6 (lower is better) Translates to: TELYSLLTAFAK*EPYSSLEGGEC Trigger: GCACTCACCACCTTCTAGGCTGGAGTAAGGCTCCAACTTTGCAAATGCTGTTAGTAAACTGTAGAGCTCCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000622944.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS CAA 90 bp | CTTCCAAGGAGGTCAGGAAGGAAAGCAGTTGCTATGGCAACATCTTaGGCAGCTATTTTCATCCTTCTCTGGTTCAGAACAGCTTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LPRRSGRKAVAMATS*AAIFILLWFRTASS Trigger: GCTGGAAGCTGTTCTGAACCAGAGAAGGATGAAAATAGCTGCCAAAGATGTTGCCATAGCAACTGCTTTCCTTCCTGACCTCCTTGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS CAA 90 bp | GAAAATGAGGGAGTTCACTTCCAAGGAGGTCAGGAAGGAAAGCAGTaGCTATGGCAACATCTTTGGCAGCTATTTTCATCCTTCTCTGGT | + |
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Preference number: 6 (lower is better) Translates to: ENEGVHFQGGQEGKQ*LWQHLWQLFSSFSG Trigger: ACCAGAGAAGGATGAAAATAGCTGCCAAAGATGTTGCCATAGCAACTGCTTTCCTTCCTGACCTCCTTGGAAGTGAACTCCCTCATTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS TCA 72 bp | GTAACCAAAGCCATGGGTAGAGGCACAGAAATTCCTTaGCTACTCTGGAAAATGAGGGAGTTCACCTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: VTKAMGRGTEIP*LLWKMREFTFK Trigger: CTTGAAGGTGAACTCCCTCATTTTCCAGAGTAGTCAAGGAATTTCTGTGCCTCTACCCATGGCTTTGGTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622944.2 |
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| CDS TCA 72 bp | GTAACCAAAGCCATGGGTAGAGGCACAGAAATTCCTTaGCTACTCTGGAAAATGAGGGAGTTCACTTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: VTKAMGRGTEIP*LLWKMREFTSK Trigger: CTTGGAAGTGAACTCCCTCATTTTCCAGAGTAGTCAAGGAATTTCTGTGCCTCTACCCATGGCTTTGGTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS CAA 90 bp | GCAAAGTCAACTACTAACTTCCAAGGAGGTCAGGAAGGAAAGCAGTaGCTATGGCAACATCTTTGGCAGCTATTTTCATCCTTCTCTGGT | + |
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Preference number: 6 (lower is better) Translates to: AKSTTNFQGGQEGKQ*LWQHLWQLFSSFSG Trigger: ACCAGAGAAGGATGAAAATAGCTGCCAAAGATGTTGCCATAGCAACTGCTTTCCTTCCTGACCTCCTTGGAAGTTAGTAGTTGACTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622944.2 |
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| CDS GCA 72 bp | AAGTTGGAGCCTTACTCCAGCCTAGAAGGTGGTGAGTaGTGGAATGAATATTCCATTTCACAGAAAGAAACC | + |
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Preference number: 6 (lower is better) Translates to: KLEPYSSLEGGE*WNEYSISQKET Trigger: GGTTTCTTTCTGTGAAATGGAATATTCATTCCAGCACTCACCACCTTCTAGGCTGGAGTAAGGCTCCAACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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| CDS CAA 72 bp | AGGTCAGGAAGGAAAGCAGTTGCTATGGCAACATCTTaGGCAGCTATTTTCATCCTTCTCTGGTTCAGAACA | + |
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Preference number: 6 (lower is better) Translates to: RSGRKAVAMATS*AAIFILLWFRT Trigger: TGTTCTGAACCAGAGAAGGATGAAAATAGCTGCCAAAGATGTTGCCATAGCAACTGCTTTCCTTCCTGACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000622944.2 ENST00000650251.2 ENST00000660598.1 ENST00000666139.1 |
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