Pregenerated sensors for LINC02686 (Homo sapiens)
Ensembl gene IDs: ENSG00000254594Ensembl transcript IDs: ENST00000527283.5, ENST00000534492.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCAGTCACACTAATGAGTGCCTGGAGAAATCCAGGGGCCTTAGGTaGTTGTCAAAGGAACAGGCCATAATCAATCTAGGCAACCCCACT | + |
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Preference number: 5 (lower is better) Translates to: SSHTNECLEKSRGLR*LSKEQAIINLGNPT Trigger: AGTGGGGTTGCCTAGATTGATTATGGCCTGTTCCTTTGACAAGCACCTAAGGCCCCTGGATTTCTCCAGGCACTCATTAGTGTGACTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000527283.5 ENST00000534492.1 |
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| CDS GCA 90 bp | AGTATCTTCAGGGCCTTGAGAGGGATTAGCAGTCACACTAATGAGTaGCTGGAGAAATCCAGGGGCCTTAGGTGCTTGTCAAAGGAACAG | + |
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Preference number: 5 (lower is better) Translates to: SIFRALRGISSHTNE*LEKSRGLRCLSKEQ Trigger: CTGTTCCTTTGACAAGCACCTAAGGCCCCTGGATTTCTCCAGGCACTCATTAGTGTGACTGCTAATCCCTCTCAAGGCCCTGAAGATACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527283.5 ENST00000534492.1 |
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| CDS TCA 90 bp | GAGCTTGAATATCTTTGGATCTCTAAAGAAGTATCTTCAGGGCCTTaGGAGGGATTAGCAGTCACACTAATGAGTGCCTGGAGAAATCCA | + |
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Preference number: 5 (lower is better) Translates to: ELEYLWISKEVSSGP*EGLAVTLMSAWRNP Trigger: TGGATTTCTCCAGGCACTCATTAGTGTGACTGCTAATCCCTCTCAAGGCCCTGAAGATACTTCTTTAGAGATCCAAAGATATTCAAGCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527283.5 |
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| CDS TCA 90 bp | ACCAGAAAATTACTTTGGATCTCTAAAGAAGTATCTTCAGGGCCTTaGGAGGGATTAGCAGTCACACTAATGAGTGCCTGGAGAAATCCA | + |
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Preference number: 5 (lower is better) Translates to: TRKLLWISKEVSSGP*EGLAVTLMSAWRNP Trigger: TGGATTTCTCCAGGCACTCATTAGTGTGACTGCTAATCCCTCTCAAGGCCCTGAAGATACTTCTTTAGAGATCCAAAGTAATTTTCTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534492.1 |
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| CDS GCA 90 bp | CAAAGCAGTCCGAAGGTAGGTGCTATTCTTAACCCATTCTTCAGATaGAGGAACAAAGAGAGCTTGAATATCTTTGGATCTCTAAAGAAG | + |
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Preference number: 5 (lower is better) Translates to: QSSPKVGAILNPFFR*RNKESLNIFGSLKK Trigger: CTTCTTTAGAGATCCAAAGATATTCAAGCTCTCTTTGTTCCTGCATCTGAAGAATGGGTTAAGAATAGCACCTACCTTCGGACTGCTTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527283.5 |
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| CDS GCA 72 bp | AGGGCCTTGAGAGGGATTAGCAGTCACACTAATGAGTaGCTGGAGAAATCCAGGGGCCTTAGGTGCTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: RALRGISSHTNE*LEKSRGLRCLS Trigger: TGACAAGCACCTAAGGCCCCTGGATTTCTCCAGGCACTCATTAGTGTGACTGCTAATCCCTCTCAAGGCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527283.5 ENST00000534492.1 |
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| CDS CAA 90 bp | AGTCACACTAATGAGTGCCTGGAGAAATCCAGGGGCCTTAGGTGCTaGTCAAAGGAACAGGCCATAATCAATCTAGGCAACCCCACTGAC | + |
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Preference number: 6 (lower is better) Translates to: SHTNECLEKSRGLRC*SKEQAIINLGNPTD Trigger: GTCAGTGGGGTTGCCTAGATTGATTATGGCCTGTTCCTTTGACAAGCACCTAAGGCCCCTGGATTTCTCCAGGCACTCATTAGTGTGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000527283.5 ENST00000534492.1 |
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| CDS GCA 72 bp | ACTAATGAGTGCCTGGAGAAATCCAGGGGCCTTAGGTaGTTGTCAAAGGAACAGGCCATAATCAATCTAGGC | + |
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Preference number: 6 (lower is better) Translates to: TNECLEKSRGLR*LSKEQAIINLG Trigger: GCCTAGATTGATTATGGCCTGTTCCTTTGACAAGCACCTAAGGCCCCTGGATTTCTCCAGGCACTCATTAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527283.5 ENST00000534492.1 |
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| CDS CAA 72 bp | AATGAGTGCCTGGAGAAATCCAGGGGCCTTAGGTGCTaGTCAAAGGAACAGGCCATAATCAATCTAGGCAAC | + |
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Preference number: 6 (lower is better) Translates to: NECLEKSRGLRC*SKEQAIINLGN Trigger: GTTGCCTAGATTGATTATGGCCTGTTCCTTTGACAAGCACCTAAGGCCCCTGGATTTCTCCAGGCACTCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000527283.5 ENST00000534492.1 |
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| CDS GCA 72 bp | CTCTATTCAATAGCTCTCAATGGATTGTATGGTGCCTaGTCTAAGGCAGGCACACTTCTGAGGGCTGTACAT | + |
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Preference number: 6 (lower is better) Translates to: LYSIALNGLYGA*SKAGTLLRAVH Trigger: ATGTACAGCCCTCAGAAGTGTGCCTGCCTTAGAGCAGGCACCATACAATCCATTGAGAGCTATTGAATAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527283.5 |
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| CDS TCA 72 bp | GATTGTATGGTGCCTGCTCTAAGGCAGGCACACTTCTaGGGGCTGTACATTAAATACTTTATTCTCAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: DCMVPALRQAHF*GLYIKYFILKA Trigger: TGCTTTGAGAATAAAGTATTTAATGTACAGCCCTCAGAAGTGTGCCTGCCTTAGAGCAGGCACCATACAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000527283.5 |
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| CDS GCA 72 bp | CCGAAGGTAGGTGCTATTCTTAACCCATTCTTCAGATaGAGGAACAAAGAGAGCTTGAATATCTTTGGATCT | + |
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Preference number: 6 (lower is better) Translates to: PKVGAILNPFFR*RNKESLNIFGS Trigger: AGATCCAAAGATATTCAAGCTCTCTTTGTTCCTGCATCTGAAGAATGGGTTAAGAATAGCACCTACCTTCGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527283.5 |
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| CDS CAA 90 bp | GGTGCTATTCTTAACCCATTCTTCAGATGCAGGAACAAAGAGAGCTaGAATATCTTTGGATCTCTAAAGAAGTATCTTCAGGGCCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: GAILNPFFRCRNKES*NIFGSLKKYLQGLE Trigger: CTCAAGGCCCTGAAGATACTTCTTTAGAGATCCAAAGATATTCAAGCTCTCTTTGTTCCTGCATCTGAAGAATGGGTTAAGAATAGCACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527283.5 |
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| CDS CAA 72 bp | CTTAACCCATTCTTCAGATGCAGGAACAAAGAGAGCTaGAATATCTTTGGATCTCTAAAGAAGTATCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: LNPFFRCRNKES*NIFGSLKKYLQ Trigger: CTGAAGATACTTCTTTAGAGATCCAAAGATATTCAAGCTCTCTTTGTTCCTGCATCTGAAGAATGGGTTAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527283.5 |
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| CDS CAA 72 bp | CATACAGATTTTCCAGAAGACCGTTACTTCATCTTTTaGCTCTATTCAATAGCTCTCAATGGATTGTATGGT | + |
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Preference number: 6 (lower is better) Translates to: HTDFPEDRYFIF*LYSIALNGLYG Trigger: ACCATACAATCCATTGAGAGCTATTGAATAGAGCAAAAAGATGAAGTAACGGTCTTCTGGAAAATCTGTATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000527283.5 |
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