Pregenerated sensors for LINC02672 (Homo sapiens)
Ensembl gene IDs: ENSG00000227121Ensembl transcript IDs: ENST00000444155.1, ENST00000654808.1, ENST00000668157.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGAAACAGAAGCCACACCTGTGGCTTGTGCAGCAGTGAGGCAAGATaGTGGGTTCCCACACTATTAGCCCCCAGACCCAGAGGGGTTTAT | + |
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Preference number: 5 (lower is better) Translates to: RNRSHTCGLCSSEAR*WVPTLLAPRPRGVY Trigger: ATAAACCCCTCTGGGTCTGGGGGCTAATAGTGTGGGAACCCATCATCTTGCCTCACTGCTGCACAAGCCACAGGTGTGGCTTCTGTTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000654808.1 ENST00000668157.1 |
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| CDS GCA 90 bp | TGCCAGTGGCTTCTCTCCTGTTTGGCAAGCAGGAGAGAATGTTACTaGTCTTTTACTACCACTGCTCACAGCTCGGCAAGCAGGAGCATT | + |
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Preference number: 5 (lower is better) Translates to: CQWLLSCLASRRECY*SFTTTAHSSASRSI Trigger: AATGCTCCTGCTTGCCGAGCTGTGAGCAGTGGTAGTAAAAGAGCAGTAACATTCTCTCCTGCTTGCCAAACAGGAGAGAAGCCACTGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000444155.1 ENST00000654808.1 ENST00000668157.1 |
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| CDS TCA 72 bp | AGCCACACCTGTGGCTTGTGCAGCAGTGAGGCAAGATaGTGGGTTCCCACACTATTAGCCCCCAGACCCAGA | + |
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Preference number: 6 (lower is better) Translates to: SHTCGLCSSEAR*WVPTLLAPRPR Trigger: TCTGGGTCTGGGGGCTAATAGTGTGGGAACCCATCATCTTGCCTCACTGCTGCACAAGCCACAGGTGTGGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000654808.1 ENST00000668157.1 |
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| CDS CAA 90 bp | AGTTCAGTGAGTGGGAGGGAGTGGTGCCAGTGGCTTCTCTCCTGTTaGGCAAGCAGGAGAGAATGTTACTGCTCTTTTACTACCACTGCT | + |
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Preference number: 6 (lower is better) Translates to: SSVSGREWCQWLLSC*ASRRECYCSFTTTA Trigger: AGCAGTGGTAGTAAAAGAGCAGTAACATTCTCTCCTGCTTGCCAAACAGGAGAGAAGCCACTGGCACCACTCCCTCCCACTCACTGAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000444155.1 ENST00000654808.1 ENST00000668157.1 |
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| CDS TCA 72 bp | TGGAGTCTCCTGTCTGGCTCGCCAAGATGTAACACCTaGGGTTCTTGCCAAGCCACACCAAAGAAATGGTGT | + |
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Preference number: 6 (lower is better) Translates to: WSLLSGSPRCNT*GSCQATPKKWC Trigger: ACACCATTTCTTTGGTGTGGCTTGGCAAGAACCTCAGGTGTTACATCTTGGCGAGCCAGACAGGAGACTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654808.1 ENST00000668157.1 |
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| CDS GCA 72 bp | TTTCTCTTCTATAGTTCAGTGAGTGGGAGGGAGTGGTaGCAGTGGCTTCTCTCCTGTTTGGCAAGCAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: FLFYSSVSGREW*QWLLSCLASRR Trigger: TCTCCTGCTTGCCAAACAGGAGAGAAGCCACTGGCACCACTCCCTCCCACTCACTGAACTATAGAAGAGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000444155.1 ENST00000654808.1 ENST00000668157.1 |
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| CDS CCA 72 bp | TTCTATAGTTCAGTGAGTGGGAGGGAGTGGTGCCAGTaGCTTCTCTCCTGTTTGGCAAGCAGGAGAGAATGT | + |
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Preference number: 6 (lower is better) Translates to: FYSSVSGREWCQ*LLSCLASRREC Trigger: ACATTCTCTCCTGCTTGCCAAACAGGAGAGAAGCCACTGGCACCACTCCCTCCCACTCACTGAACTATAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000444155.1 ENST00000654808.1 ENST00000668157.1 |
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| CDS GCA 72 bp | CTTCTCTCCTGTTTGGCAAGCAGGAGAGAATGTTACTaGTCTTTTACTACCACTGCTCACAGCTCGGCAAGC | + |
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Preference number: 6 (lower is better) Translates to: LLSCLASRRECY*SFTTTAHSSAS Trigger: GCTTGCCGAGCTGTGAGCAGTGGTAGTAAAAGAGCAGTAACATTCTCTCCTGCTTGCCAAACAGGAGAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000444155.1 ENST00000654808.1 ENST00000668157.1 |
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| CDS CCA 72 bp | CTGAGGTTCTTGCCAAGCCACACCAAAGAAATGGTGTaGAAGCTGACCACAGTGAGTGAAAGAGACATGGAC | + |
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Preference number: 6 (lower is better) Translates to: LRFLPSHTKEMV*KLTTVSERDMD Trigger: GTCCATGTCTCTTTCACTCACTGTGGTCAGCTTCCACACCATTTCTTTGGTGTGGCTTGGCAAGAACCTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654808.1 ENST00000668157.1 |
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| CDS GCA 72 bp | AAGCAGGAGAGAATGTTACTGCTCTTTTACTACCACTaGTCACAGCTCGGCAAGCAGGAGCATTACAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: KQERMLLLFYYH*SQLGKQEHYRS Trigger: AGACCTGTAATGCTCCTGCTTGCCGAGCTGTGAGCAGTGGTAGTAAAAGAGCAGTAACATTCTCTCCTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000444155.1 ENST00000654808.1 ENST00000668157.1 |
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| CDS CCA 72 bp | TCTGATTTCTGCACACTGGTGCTTTTGGTGCTCTTCTaGGTCAACAGAGGTAATTCTATCATTTCCCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: SDFCTLVLLVLF*VNRGNSIISPG Trigger: GCCTGGGGAAATGATAGAATTACCTCTGTTGACCCAGAAGAGCACCAAAAGCACCAGTGTGCAGAAATCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000444155.1 ENST00000654808.1 ENST00000668157.1 |
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| CDS CAA 72 bp | GAGTACTTGATAGGATATAGGTTTAGCAGAAGTGCATaGGTGATGGGAAACAGATCAGGCCCAGTGGGGTTC | + |
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Preference number: 6 (lower is better) Translates to: EYLIGYRFSRSA*VMGNRSGPVGF Trigger: GAACCCCACTGGGCCTGATCTGTTTCCCATCACCAATGCACTTCTGCTAAACCTATATCCTATCAAGTACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654808.1 ENST00000668157.1 |
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| CDS GCA 72 bp | ACTTTTAGCTTGAGGTCTCTGATTTCTGCACACTGGTaGTTTTGGTGCTCTTCTGGGTCAACAGAGGTAATT | + |
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Preference number: 6 (lower is better) Translates to: TFSLRSLISAHW*FWCSSGSTEVI Trigger: AATTACCTCTGTTGACCCAGAAGAGCACCAAAAGCACCAGTGTGCAGAAATCAGAGACCTCAAGCTAAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000444155.1 ENST00000654808.1 ENST00000668157.1 |
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| CDS CCA 72 bp | ACATGTAGAGGAGAGGTGCACATGCTTCAGAGGGAATaGGTAGAAATTTGCCCTAATAGCAGGATTTATGAT | + |
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Preference number: 6 (lower is better) Translates to: TCRGEVHMLQRE*VEICPNSRIYD Trigger: ATCATAAATCCTGCTATTAGGGCAAATTTCTACCCATTCCCTCTGAAGCATGTGCACCTCTCCTCTACATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654808.1 ENST00000668157.1 |
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| CDS CAA 72 bp | GGAGTTGCTTTAGCCTCCAGATTCCACTCCACTAATTaGGCTTTTATAATCTCACACACCCTCATCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: GVALASRFHSTN*AFIISHTLIFC Trigger: ACAGAAGATGAGGGTGTGTGAGATTATAAAAGCCAAATTAGTGGAGTGGAATCTGGAGGCTAAAGCAACTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654808.1 ENST00000668157.1 |
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| CDS CAA 90 bp | ATCCAAGATGGAGTTGCTTTAGCCTCCAGATTCCACTCCACTAATTaGGCTTTTATAATCTCACACACCCTCATCTTCTGTTATGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: IQDGVALASRFHSTN*AFIISHTLIFCYGL Trigger: GAGACCATAACAGAAGATGAGGGTGTGTGAGATTATAAAAGCCAAATTAGTGGAGTGGAATCTGGAGGCTAAAGCAACTCCATCTTGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654808.1 ENST00000668157.1 |
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