Pregenerated sensors for LINC02655 (Homo sapiens)
Ensembl gene IDs: ENSG00000231082Ensembl transcript IDs: ENST00000436500.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATGTCTGTCTCCCCAGGTATGGAGGGAAAGGTGAGGGTCACCTCGTaGTGGGGTCACGTAGACTCCACAGCAAAGTTTAAATGCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: MSVSPGMEGKVRVTS*WGHVDSTAKFKCWR Trigger: CCTCCAGCATTTAAACTTTGCTGTGGAGTCTACGTGACCCCACCACGAGGTGACCCTCACCTTTCCCTCCATACCTGGGGAGACAGACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436500.1 |
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| CDS CCA 90 bp | TCTGTCTCCCCAGGTATGGAGGGAAAGGTGAGGGTCACCTCGTGGTaGGGTCACGTAGACTCCACAGCAAAGTTTAAATGCTGGAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: SVSPGMEGKVRVTSW*GHVDSTAKFKCWRF Trigger: AAACCTCCAGCATTTAAACTTTGCTGTGGAGTCTACGTGACCCCACCACGAGGTGACCCTCACCTTTCCCTCCATACCTGGGGAGACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436500.1 |
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| CDS CCA 90 bp | ACCTCGTGGTGGGGTCACGTAGACTCCACAGCAAAGTTTAAATGCTaGAGGTTTGGTGAGAGCTATGGCTTCTGCCTTTCCTATCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: TSWWGHVDSTAKFKC*RFGESYGFCLSYQG Trigger: GCCCTGATAGGAAAGGCAGAAGCCATAGCTCTCACCAAACCTCCAGCATTTAAACTTTGCTGTGGAGTCTACGTGACCCCACCACGAGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436500.1 |
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| CDS GCA 90 bp | GTCACCTCGTGGTGGGGTCACGTAGACTCCACAGCAAAGTTTAAATaGTGGAGGTTTGGTGAGAGCTATGGCTTCTGCCTTTCCTATCAG | + |
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Preference number: 5 (lower is better) Translates to: VTSWWGHVDSTAKFK*WRFGESYGFCLSYQ Trigger: CTGATAGGAAAGGCAGAAGCCATAGCTCTCACCAAACCTCCAGCATTTAAACTTTGCTGTGGAGTCTACGTGACCCCACCACGAGGTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436500.1 |
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| CDS TCA 72 bp | ATAAAGGATGAGGTAGCGTGTCATCCCAGGGTTCAGTaGCCACTGCCATGTCTGTCTCCCCAGGTATGGAGG | + |
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Preference number: 6 (lower is better) Translates to: IKDEVACHPRVQ*PLPCLSPQVWR Trigger: CCTCCATACCTGGGGAGACAGACATGGCAGTGGTCACTGAACCCTGGGATGACACGCTACCTCATCCTTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436500.1 |
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| CDS CCA 72 bp | CCAGGTATGGAGGGAAAGGTGAGGGTCACCTCGTGGTaGGGTCACGTAGACTCCACAGCAAAGTTTAAATGC | + |
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Preference number: 6 (lower is better) Translates to: PGMEGKVRVTSW*GHVDSTAKFKC Trigger: GCATTTAAACTTTGCTGTGGAGTCTACGTGACCCCACCACGAGGTGACCCTCACCTTTCCCTCCATACCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436500.1 |
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| CDS CCA 72 bp | TCCCCAGGTATGGAGGGAAAGGTGAGGGTCACCTCGTaGTGGGGTCACGTAGACTCCACAGCAAAGTTTAAA | + |
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Preference number: 6 (lower is better) Translates to: SPGMEGKVRVTS*WGHVDSTAKFK Trigger: TTTAAACTTTGCTGTGGAGTCTACGTGACCCCACCACGAGGTGACCCTCACCTTTCCCTCCATACCTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436500.1 |
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| CDS CCA 72 bp | ATCAGGGCGGTAACTAGTACAGACACCAGCAGTTCCTaGATCTTCTTTTCCCAGCCATCCTCGGGGGTAGTT | + |
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Preference number: 6 (lower is better) Translates to: IRAVTSTDTSSS*IFFSQPSSGVV Trigger: AACTACCCCCGAGGATGGCTGGGAAAAGAAGATCCAGGAACTGCTGGTGTCTGTACTAGTTACCGCCCTGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436500.1 |
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| CDS GCA 72 bp | TGGTGGGGTCACGTAGACTCCACAGCAAAGTTTAAATaGTGGAGGTTTGGTGAGAGCTATGGCTTCTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: WWGHVDSTAKFK*WRFGESYGFCL Trigger: AAGGCAGAAGCCATAGCTCTCACCAAACCTCCAGCATTTAAACTTTGCTGTGGAGTCTACGTGACCCCACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436500.1 |
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