Pregenerated sensors for LINC02576 (Homo sapiens)

Ensembl gene IDs: ENSG00000232613

Ensembl transcript IDs: ENST00000415327.5, ENST00000622718.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTGACACTTCCTTCGCACTTTTGTGGCACCTCTAGCACTGCCACTTaGTTGGTTTTTGACAGCTGGTACCATCAACAAACAAATGCTGTA	+
Preference number: 5 (lower is better) Translates to: LTLPSHFCGTSSTAT*LVFDSWYHQQTNAV Trigger: TACAGCATTTGTTTGTTGATGGTACCAGCTGTCAAAAACCAAGCAAGTGGCAGTGCTAGAGGTGCCACAAAAGTGCGAAGGAAGTGTCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000415327.5 ENST00000622718.1
CDS GCA 72 bp	CCTTCGCACTTTTGTGGCACCTCTAGCACTGCCACTTaGTTGGTTTTTGACAGCTGGTACCATCAACAAACA	+
Preference number: 6 (lower is better) Translates to: PSHFCGTSSTAT*LVFDSWYHQQT Trigger: TGTTTGTTGATGGTACCAGCTGTCAAAAACCAAGCAAGTGGCAGTGCTAGAGGTGCCACAAAAGTGCGAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000415327.5 ENST00000622718.1
CDS TCA 72 bp	TGTGAGCCACCACACCTGGTCAGATCCGAGGTATTTTaGACTAAACAGAACAGCAACCAACATCCATATAAA	+
Preference number: 6 (lower is better) Translates to: CEPPHLVRSEVF*TKQNSNQHPYK Trigger: TTTATATGGATGTTGGTTGCTGTTCTGTTTAGTTCAAAATACCTCGGATCTGACCAGGTGTGGTGGCTCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622718.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu