Pregenerated sensors for LINC02553 (Homo sapiens)
Ensembl gene IDs: ENSG00000255039Ensembl transcript IDs: ENST00000529088.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CAA 72 bp | GAAGACTGTCCCTGGAACATGATGTTTTCGCATTCCTaGTGTGCTGTAGGCATGCAGTGGTGGGGTAATCAG | + |
|
Preference number: 6 (lower is better) Translates to: EDCPWNMMFSHS*CAVGMQWWGNQ Trigger: CTGATTACCCCACCACTGCATGCCTACAGCACACAAGGAATGCGAAAACATCATGTTCCAGGGACAGTCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000529088.1 |
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| CDS TCA 72 bp | ATCTCTGAATTCCCAGAACATAATCTCATTTGGTGTTaGCCACATCTCTGCCTTCTATCCGCCACCACCAGC | + |
|
Preference number: 6 (lower is better) Translates to: ISEFPEHNLIWC*PHLCLLSATTS Trigger: GCTGGTGGTGGCGGATAGAAGGCAGAGATGTGGTCAACACCAAATGAGATTATGTTCTGGGAATTCAGAGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000529088.1 |
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| CDS CCA 72 bp | ATGTTTTCGCATTCCTTGTGTGCTGTAGGCATGCAGTaGTGGGGTAATCAGATCACAGATGGGTCAAATCCA | + |
|
Preference number: 6 (lower is better) Translates to: MFSHSLCAVGMQ*WGNQITDGSNP Trigger: TGGATTTGACCCATCTGTGATCTGATTACCCCACCACTGCATGCCTACAGCACACAAGGAATGCGAAAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000529088.1 |
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| CDS CCA 72 bp | TTTTCGCATTCCTTGTGTGCTGTAGGCATGCAGTGGTaGGGTAATCAGATCACAGATGGGTCAAATCCATTT | + |
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Preference number: 6 (lower is better) Translates to: FSHSLCAVGMQW*GNQITDGSNPF Trigger: AAATGGATTTGACCCATCTGTGATCTGATTACCCCACCACTGCATGCCTACAGCACACAAGGAATGCGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000529088.1 |
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| CDS CAA 72 bp | AAGAGTGGGTCCATTCAAGGAAGGATTGTTTGTCTTTaGTCTAGCGCAAATGAAGACTGTCCCTGGAACATG | + |
|
Preference number: 6 (lower is better) Translates to: KSGSIQGRIVCL*SSANEDCPWNM Trigger: CATGTTCCAGGGACAGTCTTCATTTGCGCTAGACAAAAGACAAACAATCCTTCCTTGAATGGACCCACTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000529088.1 |
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