Pregenerated sensors for LINC02448 (Homo sapiens)
Ensembl gene IDs: ENSG00000257230Ensembl transcript IDs: ENST00000548613.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGGATCCCATCTCAGTCACACAGAATCTGCTTTGTTTTCAGATTATaGACCACAAAGATACACACGAACTGTCTTGATTTGAAGGGAGCC | + |
|
Preference number: 5 (lower is better) Translates to: RIPSQSHRICFVFRL*TTKIHTNCLDLKGA Trigger: GGCTCCCTTCAAATCAAGACAGTTCGTGTGTATCTTTGTGGTTCATAATCTGAAAACAAAGCAGATTCTGTGTGACTGAGATGGGATCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548613.1 |
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| CDS TCA 90 bp | CTTTGTTTTCAGATTATGAACCACAAAGATACACACGAACTGTCTTaGTTTGAAGGGAGCCTAAAACTTGATACTTCTCTCGTTGTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: LCFQIMNHKDTHELS*FEGSLKLDTSLVVE Trigger: TTCAACAACGAGAGAAGTATCAAGTTTTAGGCTCCCTTCAAATCAAGACAGTTCGTGTGTATCTTTGTGGTTCATAATCTGAAAACAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000548613.1 |
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| CDS CAA 90 bp | GGTTTCCAGCCCCTAGGATCCCATCTCAGTCACACAGAATCTGCTTaGTTTTCAGATTATGAACCACAAAGATACACACGAACTGTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: GFQPLGSHLSHTESA*FSDYEPQRYTRTVL Trigger: CAAGACAGTTCGTGTGTATCTTTGTGGTTCATAATCTGAAAACAAAGCAGATTCTGTGTGACTGAGATGGGATCCTAGGGGCTGGAAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000548613.1 |
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| CDS TCA 72 bp | CAGATTATGAACCACAAAGATACACACGAACTGTCTTaGTTTGAAGGGAGCCTAAAACTTGATACTTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: QIMNHKDTHELS*FEGSLKLDTSL Trigger: GAGAGAAGTATCAAGTTTTAGGCTCCCTTCAAATCAAGACAGTTCGTGTGTATCTTTGTGGTTCATAATCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548613.1 |
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