Pregenerated sensors for LINC02404 (Homo sapiens)
Ensembl gene IDs: ENSG00000257893Ensembl transcript IDs: ENST00000546710.2, ENST00000668890.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGGGGAGTTGGCTGAGGGAAGACCCAGATTATGGTTGCCTGTTGTaGCTTTCTAGGTCCTCAGATCCAGGTGGGCATCATGGGCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: QGSWLREDPDYGCLL*LSRSSDPGGHHGPL Trigger: CAGAGGCCCATGATGCCCACCTGGATCTGAGGACCTAGAAAGCCACAACAGGCAACCATAATCTGGGTCTTCCCTCAGCCAACTCCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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| CDS CCA 90 bp | AGCATCCCTCATGGCCCTGCTGTCCACAGGGTCTTAGAGGGAAACTaGCATTGTCATCAGCCCTCTCCTGTCTGGGACCTGCCTTTGATC | + |
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Preference number: 5 (lower is better) Translates to: SIPHGPAVHRVLEGN*HCHQPSPVWDLPLI Trigger: GATCAAAGGCAGGTCCCAGACAGGAGAGGGCTGATGACAATGCCAGTTTCCCTCTAAGACCCTGTGGACAGCAGGGCCATGAGGGATGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS GCA 90 bp | CACTGCATCAAGCAAGACTCTGTGTCACAGCATCCCTCATGGCCCTaGTGTCCACAGGGTCTTAGAGGGAAACTGGCATTGTCATCAGCC | + |
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Preference number: 5 (lower is better) Translates to: HCIKQDSVSQHPSWP*CPQGLRGKLALSSA Trigger: GGCTGATGACAATGCCAGTTTCCCTCTAAGACCCTGTGGACAGCAGGGCCATGAGGGATGCTGTGACACAGAGTCTTGCTTGATGCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS CCA 90 bp | ACCACACACTGCATCAAGCAAGACTCTGTGTCACAGCATCCCTCATaGCCCTGCTGTCCACAGGGTCTTAGAGGGAAACTGGCATTGTCA | + |
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Preference number: 5 (lower is better) Translates to: TTHCIKQDSVSQHPS*PCCPQGLRGKLALS Trigger: TGACAATGCCAGTTTCCCTCTAAGACCCTGTGGACAGCAGGGCCATGAGGGATGCTGTGACACAGAGTCTTGCTTGATGCAGTGTGTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS GCA 90 bp | CACTTTATGCAGGGGAGTTGGCTGAGGGAAGACCCAGATTATGGTTaGCTGTTGTGGCTTTCTAGGTCCTCAGATCCAGGTGGGCATCAT | + |
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Preference number: 5 (lower is better) Translates to: HFMQGSWLREDPDYG*LLWLSRSSDPGGHH Trigger: ATGATGCCCACCTGGATCTGAGGACCTAGAAAGCCACAACAGGCAACCATAATCTGGGTCTTCCCTCAGCCAACTCCCCTGCATAAAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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| CDS CCA 90 bp | AGGGTCTTAGAGGGAAACTGGCATTGTCATCAGCCCTCTCCTGTCTaGGACCTGCCTTTGATCGTTTTCACAGCTGTCACACTCCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: RVLEGNWHCHQPSPV*DLPLIVFTAVTLQS Trigger: AGACTGGAGTGTGACAGCTGTGAAAACGATCAAAGGCAGGTCCCAGACAGGAGAGGGCTGATGACAATGCCAGTTTCCCTCTAAGACCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS TCA 90 bp | GAAACTGGCATTGTCATCAGCCCTCTCCTGTCTGGGACCTGCCTTTaGTCGTTTTCACAGCTGTCACACTCCAGTCTGCTCACAAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: ETGIVISPLLSGTCL*SFSQLSHSSLLTKN Trigger: GTTCTTTGTGAGCAGACTGGAGTGTGACAGCTGTGAAAACGATCAAAGGCAGGTCCCAGACAGGAGAGGGCTGATGACAATGCCAGTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS TCA 90 bp | CATTTTCCTTGGGTTTCACACCAAGAGTGGCTGAACCCACTCCTGTaGGTAACACCACACACTGCATCAAGCAAGACTCTGTGTCACAGC | + |
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Preference number: 5 (lower is better) Translates to: HFPWVSHQEWLNPLL*VTPHTASSKTLCHS Trigger: GCTGTGACACAGAGTCTTGCTTGATGCAGTGTGTGGTGTTACTCACAGGAGTGGGTTCAGCCACTCTTGGTGTGAAACCCAAGGAAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS GCA 90 bp | CTGGGACCTGCCTTTGATCGTTTTCACAGCTGTCACACTCCAGTCTaGTCACAAAGAACAACAGATTGCTGGGAGAGGAATGCTCACCAT | + |
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Preference number: 5 (lower is better) Translates to: LGPAFDRFHSCHTPV*SQRTTDCWERNAHH Trigger: ATGGTGAGCATTCCTCTCCCAGCAATCTGTTGTTCTTTGTGAGCAGACTGGAGTGTGACAGCTGTGAAAACGATCAAAGGCAGGTCCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS CCA 90 bp | CAAAAGCTTCAGAGCATCACCAGGGAAATAACCCTGGCCCACATTTaGTGGACTTCTGCAGAACTCATACACACATCTCCTTTAATGCAA | + |
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Preference number: 5 (lower is better) Translates to: QKLQSITREITLAHI*WTSAELIHTSPLMQ Trigger: TTGCATTAAAGGAGATGTGTGTATGAGTTCTGCAGAAGTCCACCAAATGTGGGCCAGGGTTATTTCCCTGGTGATGCTCTGAAGCTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS GCA 90 bp | CACTCCAGTCTGCTCACAAAGAACAACAGATTGCTGGGAGAGGAATaGTCACCATACAGCTACCTGAAAGATAAGAACTGCCATTGTTTT | + |
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Preference number: 5 (lower is better) Translates to: HSSLLTKNNRLLGEE*SPYSYLKDKNCHCF Trigger: AAAACAATGGCAGTTCTTATCTTTCAGGTAGCTGTATGGTGAGCATTCCTCTCCCAGCAATCTGTTGTTCTTTGTGAGCAGACTGGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS CCA 72 bp | CATGGCCCTGCTGTCCACAGGGTCTTAGAGGGAAACTaGCATTGTCATCAGCCCTCTCCTGTCTGGGACCTG | + |
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Preference number: 6 (lower is better) Translates to: HGPAVHRVLEGN*HCHQPSPVWDL Trigger: CAGGTCCCAGACAGGAGAGGGCTGATGACAATGCCAGTTTCCCTCTAAGACCCTGTGGACAGCAGGGCCATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS CAA 72 bp | CCCTGCTGTCCACAGGGTCTTAGAGGGAAACTGGCATaGTCATCAGCCCTCTCCTGTCTGGGACCTGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: PCCPQGLRGKLA*SSALSCLGPAF Trigger: AAAGGCAGGTCCCAGACAGGAGAGGGCTGATGACAATGCCAGTTTCCCTCTAAGACCCTGTGGACAGCAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS CAA 90 bp | ATGCAGGGGAGTTGGCTGAGGGAAGACCCAGATTATGGTTGCCTGTaGTGGCTTTCTAGGTCCTCAGATCCAGGTGGGCATCATGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: MQGSWLREDPDYGCL*WLSRSSDPGGHHGP Trigger: AGGCCCATGATGCCCACCTGGATCTGAGGACCTAGAAAGCCACAACAGGCAACCATAATCTGGGTCTTCCCTCAGCCAACTCCCCTGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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| CDS CAA 90 bp | CCCTCATGGCCCTGCTGTCCACAGGGTCTTAGAGGGAAACTGGCATaGTCATCAGCCCTCTCCTGTCTGGGACCTGCCTTTGATCGTTTT | + |
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Preference number: 6 (lower is better) Translates to: PSWPCCPQGLRGKLA*SSALSCLGPAFDRF Trigger: AAAACGATCAAAGGCAGGTCCCAGACAGGAGAGGGCTGATGACAATGCCAGTTTCCCTCTAAGACCCTGTGGACAGCAGGGCCATGAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS GCA 72 bp | CAGGGGAGTTGGCTGAGGGAAGACCCAGATTATGGTTaGCTGTTGTGGCTTTCTAGGTCCTCAGATCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: QGSWLREDPDYG*LLWLSRSSDPG Trigger: ACCTGGATCTGAGGACCTAGAAAGCCACAACAGGCAACCATAATCTGGGTCTTCCCTCAGCCAACTCCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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| CDS CCA 72 bp | TGCATCAAGCAAGACTCTGTGTCACAGCATCCCTCATaGCCCTGCTGTCCACAGGGTCTTAGAGGGAAACTG | + |
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Preference number: 6 (lower is better) Translates to: CIKQDSVSQHPS*PCCPQGLRGKL Trigger: CAGTTTCCCTCTAAGACCCTGTGGACAGCAGGGCCATGAGGGATGCTGTGACACAGAGTCTTGCTTGATGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS TCA 72 bp | ATTGTCATCAGCCCTCTCCTGTCTGGGACCTGCCTTTaGTCGTTTTCACAGCTGTCACACTCCAGTCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: IVISPLLSGTCL*SFSQLSHSSLL Trigger: GAGCAGACTGGAGTGTGACAGCTGTGAAAACGATCAAAGGCAGGTCCCAGACAGGAGAGGGCTGATGACAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS CAA 72 bp | AGTTGGCTGAGGGAAGACCCAGATTATGGTTGCCTGTaGTGGCTTTCTAGGTCCTCAGATCCAGGTGGGCAT | + |
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Preference number: 6 (lower is better) Translates to: SWLREDPDYGCL*WLSRSSDPGGH Trigger: ATGCCCACCTGGATCTGAGGACCTAGAAAGCCACAACAGGCAACCATAATCTGGGTCTTCCCTCAGCCAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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| CDS CAA 90 bp | GGAAACTGGCATTGTCATCAGCCCTCTCCTGTCTGGGACCTGCCTTaGATCGTTTTCACAGCTGTCACACTCCAGTCTGCTCACAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: GNWHCHQPSPVWDLP*IVFTAVTLQSAHKE Trigger: TTCTTTGTGAGCAGACTGGAGTGTGACAGCTGTGAAAACGATCAAAGGCAGGTCCCAGACAGGAGAGGGCTGATGACAATGCCAGTTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS TCA 72 bp | TGGGTTTCACACCAAGAGTGGCTGAACCCACTCCTGTaGGTAACACCACACACTGCATCAAGCAAGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: WVSHQEWLNPLL*VTPHTASSKTL Trigger: CAGAGTCTTGCTTGATGCAGTGTGTGGTGTTACTCACAGGAGTGGGTTCAGCCACTCTTGGTGTGAAACCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS CCA 72 bp | CAGAGCATCACCAGGGAAATAACCCTGGCCCACATTTaGTGGACTTCTGCAGAACTCATACACACATCTCCT | + |
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Preference number: 6 (lower is better) Translates to: QSITREITLAHI*WTSAELIHTSP Trigger: AGGAGATGTGTGTATGAGTTCTGCAGAAGTCCACCAAATGTGGGCCAGGGTTATTTCCCTGGTGATGCTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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| CDS CCA 72 bp | GCCAGGAGCCCACCCAGGCCGAGCCATCAACCAATCTaGTCTCATCTTCTTTTATCCAGGCTTATTTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: ARSPPRPSHQPI*SHLLLSRLILF Trigger: AAACAAAATAAGCCTGGATAAAAGAAGATGAGACCAGATTGGTTGATGGCTCGGCCTGGGTGGGCTCCTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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| CDS CAA 72 bp | TCAGAGCATCACCAGGGAAATAACCCTGGCCCACATTaGGTGGACTTCTGCAGAACTCATACACACATCTCC | + |
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Preference number: 6 (lower is better) Translates to: SEHHQGNNPGPH*VDFCRTHTHIS Trigger: GGAGATGTGTGTATGAGTTCTGCAGAAGTCCACCAAATGTGGGCCAGGGTTATTTCCCTGGTGATGCTCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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| CDS CAA 90 bp | GCAAAAGCTTCAGAGCATCACCAGGGAAATAACCCTGGCCCACATTaGGTGGACTTCTGCAGAACTCATACACACATCTCCTTTAATGCA | + |
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Preference number: 6 (lower is better) Translates to: AKASEHHQGNNPGPH*VDFCRTHTHISFNA Trigger: TGCATTAAAGGAGATGTGTGTATGAGTTCTGCAGAAGTCCACCAAATGTGGGCCAGGGTTATTTCCCTGGTGATGCTCTGAAGCTTTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS GCA 72 bp | GCCTTTGATCGTTTTCACAGCTGTCACACTCCAGTCTaGTCACAAAGAACAACAGATTGCTGGGAGAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: AFDRFHSCHTPV*SQRTTDCWERN Trigger: ATTCCTCTCCCAGCAATCTGTTGTTCTTTGTGAGCAGACTGGAGTGTGACAGCTGTGAAAACGATCAAAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS CAA 90 bp | TTTTCACAGCTGTCACACTCCAGTCTGCTCACAAAGAACAACAGATaGCTGGGAGAGGAATGCTCACCATACAGCTACCTGAAAGATAAG | + |
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Preference number: 6 (lower is better) Translates to: FSQLSHSSLLTKNNR*LGEECSPYSYLKDK Trigger: CTTATCTTTCAGGTAGCTGTATGGTGAGCATTCCTCTCCCAGCAATCTGTTGTTCTTTGTGAGCAGACTGGAGTGTGACAGCTGTGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS GCA 72 bp | CTGCTCACAAAGAACAACAGATTGCTGGGAGAGGAATaGTCACCATACAGCTACCTGAAAGATAAGAACTGC | + |
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Preference number: 6 (lower is better) Translates to: LLTKNNRLLGEE*SPYSYLKDKNC Trigger: GCAGTTCTTATCTTTCAGGTAGCTGTATGGTGAGCATTCCTCTCCCAGCAATCTGTTGTTCTTTGTGAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668890.1 |
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| CDS CCA 72 bp | ATGGGTTTTTCATTCATTCACTTTATGCAGGGGAGTTaGCTGAGGGAAGACCCAGATTATGGTTGCCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: MGFSFIHFMQGS*LREDPDYGCLL Trigger: CAACAGGCAACCATAATCTGGGTCTTCCCTCAGCCAACTCCCCTGCATAAAGTGAATGAATGAAAAACCCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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| CDS CAA 72 bp | ATGTGTAAACTTGGCTTGGCCATGGTATGCAGACATTaGGTCAAACATTATTTTAGATGTTTCTGTGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: MCKLGLAMVCRH*VKHYFRCFCEG Trigger: ACCTTCACAGAAACATCTAAAATAATGTTTGACCAAATGTCTGCATACCATGGCCAAGCCAAGTTTACACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000546710.2 ENST00000668890.1 |
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