Pregenerated sensors for LINC02338 (Homo sapiens)
Ensembl gene IDs: ENSG00000277448Ensembl transcript IDs: ENST00000615202.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTGAATCCGGGAGGCGGATGTTGCACTGAGCCGCGAACGTGCCACTaGACTCCAGCCTGGGAGGCACAGCGAGACTCTGTTCCAAATTGT | + |
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Preference number: 5 (lower is better) Translates to: VNPGGGCCTEPRTCH*TPAWEAQRDSVPNC Trigger: ACAATTTGGAACAGAGTCTCGCTGTGCCTCCCAGGCTGGAGTGCAGTGGCACGTTCGCGGCTCAGTGCAACATCCGCCTCCCGGATTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS CCA 90 bp | ACCTCGCTGATTTCTAATTCTAGACTTTCTTCCCTCTGGCCTCACTaGCTTCATTCCTACTCCCAGAACATTCGCCTGTGTTCAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: TSLISNSRLSSLWPH*LHSYSQNIRLCSAS Trigger: TGAAGCTGAACACAGGCGAATGTTCTGGGAGTAGGAATGAAGCCAGTGAGGCCAGAGGGAAGAAAGTCTAGAATTAGAAATCAGCGAGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS CCA 90 bp | ATATGCTTGACCTCGCTGATTTCTAATTCTAGACTTTCTTCCCTCTaGCCTCACTGGCTTCATTCCTACTCCCAGAACATTCGCCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: ICLTSLISNSRLSSL*PHWLHSYSQNIRLC Trigger: ACACAGGCGAATGTTCTGGGAGTAGGAATGAAGCCAGTGAGGCCAGAGGGAAGAAAGTCTAGAATTAGAAATCAGCGAGGTCAAGCATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS CCA 90 bp | ATCACTCCCATGACTTTCCTTCATGAAACGCCAAACTCACTGCTCTaGCTTGAAAGATCTCAGAGAATACATTGCCATATGCTTGACCTC | + |
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Preference number: 5 (lower is better) Translates to: ITPMTFLHETPNSLL*LERSQRIHCHMLDL Trigger: GAGGTCAAGCATATGGCAATGTATTCTCTGAGATCTTTCAAGCCAGAGCAGTGAGTTTGGCGTTTCATGAAGGAAAGTCATGGGAGTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 90 bp | TGCACTTCATATCTAGAAAAGGCCACTGCAGTGCATTTTCAATGCTaGCTGTCATTCAATTTGCAAATTACAGGTCTGCTACCGAACATT | + |
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Preference number: 5 (lower is better) Translates to: CTSYLEKATAVHFQC*LSFNLQITGLLPNI Trigger: AATGTTCGGTAGCAGACCTGTAATTTGCAAATTGAATGACAGGCAGCATTGAAAATGCACTGCAGTGGCCTTTTCTAGATATGAAGTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 90 bp | AAATGCACTTCATATCTAGAAAAGGCCACTGCAGTGCATTTTCAATaGTGCCTGTCATTCAATTTGCAAATTACAGGTCTGCTACCGAAC | + |
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Preference number: 5 (lower is better) Translates to: KCTSYLEKATAVHFQ*CLSFNLQITGLLPN Trigger: GTTCGGTAGCAGACCTGTAATTTGCAAATTGAATGACAGGCAGCATTGAAAATGCACTGCAGTGGCCTTTTCTAGATATGAAGTGCATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 90 bp | AATAGCATGATAATTTTCTCTACTCCCAACACCTCTTTACACTTGTaGTTATATACTCTACGTCAGCAAAGTGCAGAGACAGTGCCGTGT | + |
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Preference number: 5 (lower is better) Translates to: NSMIIFSTPNTSLHL*LYTLRQQSAETVPC Trigger: ACACGGCACTGTCTCTGCACTTTGCTGACGTAGAGTATATAAGCACAAGTGTAAAGAGGTGTTGGGAGTAGAGAAAATTATCATGCTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS TCA 90 bp | TCAGTAGACTATATATTATCTCTTTTTCTGCTTCAATCACTCCCATaGCTTTCCTTCATGAAACGCCAAACTCACTGCTCTGGCTTGAAA | + |
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Preference number: 5 (lower is better) Translates to: SVDYILSLFLLQSLP*LSFMKRQTHCSGLK Trigger: TTTCAAGCCAGAGCAGTGAGTTTGGCGTTTCATGAAGGAAAGTCATGGGAGTGATTGAAGCAGAAAAAGAGATAATATATAGTCTACTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS TCA 90 bp | TGTTCTTGGCCCTCTTTAACATACATTTCCACACAGCAGCCAGAGTaGCTCAGTAGACTATATATTATCTCTTTTTCTGCTTCAATCACT | + |
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Preference number: 5 (lower is better) Translates to: CSWPSLTYISTQQPE*LSRLYIISFSASIT Trigger: AGTGATTGAAGCAGAAAAAGAGATAATATATAGTCTACTGAGTCACTCTGGCTGCTGTGTGGAAATGTATGTTAAAGAGGGCCAAGAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 90 bp | GCTACTATTCTAGTTGGAGCGAGCATCATCTCTTATATCAATTCTTaGCTCAAAATGATCTACTTCTGTTCTTGGCCCTCTTTAACATAC | + |
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Preference number: 5 (lower is better) Translates to: ATILVGASIISYINS*LKMIYFCSWPSLTY Trigger: GTATGTTAAAGAGGGCCAAGAACAGAAGTAGATCATTTTGAGGCAAGAATTGATATAAGAGATGATGCTCGCTCCAACTAGAATAGTAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS TCA 90 bp | ATAAGAAACATTTTGTCACCTGCTCTCTCTCTGAAGTCTGCTATGTaGGATATTCCTCTGCACAATAAAACTTCATGTCCCATAACCTTT | + |
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Preference number: 5 (lower is better) Translates to: IRNILSPALSLKSAM*DIPLHNKTSCPITF Trigger: AAAGGTTATGGGACATGAAGTTTTATTGTGCAGAGGAATATCTCACATAGCAGACTTCAGAGAGAGAGCAGGTGACAAAATGTTTCTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 90 bp | CCTTCAAAATGGATCAATAACTTGACAATTTCTCACCATCTCTGTTaGTACTATTCTAGTTGGAGCGAGCATCATCTCTTATATCAATTC | + |
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Preference number: 5 (lower is better) Translates to: PSKWINNLTISHHLC*YYSSWSEHHLLYQF Trigger: GAATTGATATAAGAGATGATGCTCGCTCCAACTAGAATAGTAGCAACAGAGATGGTGAGAAATTGTCAAGTTATTGATCCATTTTGAAGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS CCA 90 bp | AATAACTTGACAATTTCTCACCATCTCTGTTGCTACTATTCTAGTTaGAGCGAGCATCATCTCTTATATCAATTCTTGCCTCAAAATGAT | + |
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Preference number: 5 (lower is better) Translates to: NNLTISHHLCCYYSS*SEHHLLYQFLPQND Trigger: ATCATTTTGAGGCAAGAATTGATATAAGAGATGATGCTCGCTCCAACTAGAATAGTAGCAACAGAGATGGTGAGAAATTGTCAAGTTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 72 bp | AGGCAGGAGAATGGTGTGAATCCGGGAGGCGGATGTTaGACTGAGCCGCGAACGTGCCACTGCACTCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: RQENGVNPGGGC*TEPRTCHCTPA Trigger: GGCTGGAGTGCAGTGGCACGTTCGCGGCTCAGTGCAACATCCGCCTCCCGGATTCACACCATTCTCCTGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS TCA 72 bp | GTCTCTCTGAAGTTCACACTTGTCCCTTCACTGGGCTaGTTTCATCAAGGTTCCCCAAATCCTCCATGCAGT | + |
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Preference number: 6 (lower is better) Translates to: VSLKFTLVPSLG*FHQGSPNPPCS Trigger: ACTGCATGGAGGATTTGGGGAACCTTGATGAAATCAGCCCAGTGAAGGGACAAGTGTGAACTTCAGAGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS TCA 72 bp | ATTTTGTCACCTGCTCTCTCTCTGAAGTCTGCTATGTaGGATATTCCTCTGCACAATAAAACTTCATGTCCC | + |
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Preference number: 6 (lower is better) Translates to: ILSPALSLKSAM*DIPLHNKTSCP Trigger: GGGACATGAAGTTTTATTGTGCAGAGGAATATCTCACATAGCAGACTTCAGAGAGAGAGCAGGTGACAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 72 bp | CTAGTTGGAGCGAGCATCATCTCTTATATCAATTCTTaGCTCAAAATGATCTACTTCTGTTCTTGGCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: LVGASIISYINS*LKMIYFCSWPS Trigger: AGAGGGCCAAGAACAGAAGTAGATCATTTTGAGGCAAGAATTGATATAAGAGATGATGCTCGCTCCAACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS CAA 72 bp | TCTAGTTGGAGCGAGCATCATCTCTTATATCAATTCTaGCCTCAAAATGATCTACTTCTGTTCTTGGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: SSWSEHHLLYQF*PQNDLLLFLAL Trigger: GAGGGCCAAGAACAGAAGTAGATCATTTTGAGGCAAGAATTGATATAAGAGATGATGCTCGCTCCAACTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS CCA 72 bp | ATCAATTCTTGCCTCAAAATGATCTACTTCTGTTCTTaGCCCTCTTTAACATACATTTCCACACAGCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: INSCLKMIYFCS*PSLTYISTQQP Trigger: TGGCTGCTGTGTGGAAATGTATGTTAAAGAGGGCCAAGAACAGAAGTAGATCATTTTGAGGCAAGAATTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS TCA 72 bp | CCCTCTTTAACATACATTTCCACACAGCAGCCAGAGTaGCTCAGTAGACTATATATTATCTCTTTTTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: PSLTYISTQQPE*LSRLYIISFSA Trigger: AGCAGAAAAAGAGATAATATATAGTCTACTGAGTCACTCTGGCTGCTGTGTGGAAATGTATGTTAAAGAGGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 72 bp | TCTGGCTTGAAAGATCTCAGAGAATACATTGCCATATaGTTGACCTCGCTGATTTCTAATTCTAGACTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SGLKDLREYIAI*LTSLISNSRLS Trigger: AGAAAGTCTAGAATTAGAAATCAGCGAGGTCAAGCATATGGCAATGTATTCTCTGAGATCTTTCAAGCCAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 72 bp | TGGATCAATAACTTGACAATTTCTCACCATCTCTGTTaGTACTATTCTAGTTGGAGCGAGCATCATCTCTTA | + |
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Preference number: 6 (lower is better) Translates to: WINNLTISHHLC*YYSSWSEHHLL Trigger: TAAGAGATGATGCTCGCTCCAACTAGAATAGTAGCAACAGAGATGGTGAGAAATTGTCAAGTTATTGATCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS GCA 72 bp | ATAATTTTCTCTACTCCCAACACCTCTTTACACTTGTaGTTATATACTCTACGTCAGCAAAGTGCAGAGACA | + |
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Preference number: 6 (lower is better) Translates to: IIFSTPNTSLHL*LYTLRQQSAET Trigger: TGTCTCTGCACTTTGCTGACGTAGAGTATATAAGCACAAGTGTAAAGAGGTGTTGGGAGTAGAGAAAATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS CCA 72 bp | ACAATTTCTCACCATCTCTGTTGCTACTATTCTAGTTaGAGCGAGCATCATCTCTTATATCAATTCTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: TISHHLCCYYSS*SEHHLLYQFLP Trigger: AGGCAAGAATTGATATAAGAGATGATGCTCGCTCCAACTAGAATAGTAGCAACAGAGATGGTGAGAAATTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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| CDS CAA 90 bp | TATCAGCAAATTCTTTTGACTTTCCCTTCAAAATGGATCAATAACTaGACAATTTCTCACCATCTCTGTTGCTACTATTCTAGTTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: YQQILLTFPSKWINN*TISHHLCCYYSSWS Trigger: GCTCCAACTAGAATAGTAGCAACAGAGATGGTGAGAAATTGTCAAGTTATTGATCCATTTTGAAGGGAAAGTCAAAAGAATTTGCTGATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615202.1 |
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