Pregenerated sensors for LINC02288 (Homo sapiens)
Ensembl gene IDs: ENSG00000246548Ensembl transcript IDs: ENST00000500215.3
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCCCACGGTCCCCAGCCTGGGTCAGCCAGGCCCTGGCAGAGTGGGTaGCTGTTACGACAGGTCCCAGGAAGGCAGGGTGCCCCAGAGTGG | + |
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Preference number: 5 (lower is better) Translates to: SHGPQPGSARPWQSG*LLRQVPGRQGAPEW Trigger: CCACTCTGGGGCACCCTGCCTTCCTGGGACCTGTCGTAACAGTCACCCACTCTGCCAGGGCCTGGCTGACCCAGGCTGGGGACCGTGGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 90 bp | TGCAGCCGCTACAGCCTCATGCCACATGGGGGCAGCAAGGCCCTCTaGAATGTGGGCCTGCCTCTCCCACCGCACCTTCTGGCGGGTGCA | + |
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Preference number: 5 (lower is better) Translates to: CSRYSLMPHGGSKAL*NVGLPLPPHLLAGA Trigger: TGCACCCGCCAGAAGGTGCGGTGGGAGAGGCAGGCCCACATTTCAGAGGGCCTTGCTGCCCCCATGTGGCATGAGGCTGTAGCGGCTGCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS GCA 90 bp | GCCTCATGCCACATGGGGGCAGCAAGGCCCTCTGAAATGTGGGCCTaGCTCTCCCACCGCACCTTCTGGCGGGTGCAATGGCCCAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: ASCHMGAARPSEMWA*LSHRTFWRVQWPRR Trigger: TCTTCTGGGCCATTGCACCCGCCAGAAGGTGCGGTGGGAGAGGCAGGCCCACATTTCAGAGGGCCTTGCTGCCCCCATGTGGCATGAGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS GCA 90 bp | CTGGCAGAGTGGGTGACTGTTACGACAGGTCCCAGGAAGGCAGGGTaGCCCAGAGTGGGGCCGGGTCTGCTCAAGAGGGAGTTGGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: LAEWVTVTTGPRKAG*PRVGPGLLKRELEN Trigger: ATTCTCCAACTCCCTCTTGAGCAGACCCGGCCCCACTCTGGGGCACCCTGCCTTCCTGGGACCTGTCGTAACAGTCACCCACTCTGCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | GTCAGTATAGCACAGTGGCTCAGCACATGGGCTCTGGGGGCTGGCTaGACCTGGCGTCCACTAGTGGCTCTGGCGCTTACCAGCTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: VSIAQWLSTWALGAG*TWRPLVALALTSCV Trigger: CACACAGCTGGTAAGCGCCAGAGCCACTAGTGGACGCCAGGTCCAGCCAGCCCCCAGAGCCCATGTGCTGAGCCACTGTGCTATACTGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | GGGCACCTGCACCTGGGCCTGGGCTGGACATCAGTCCTTGGCAGATaGGGAAGGTTGGCGACCAGCAAGGCACAGAATAAGGACACACGG | + |
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Preference number: 5 (lower is better) Translates to: GHLHLGLGWTSVLGR*GRLATSKAQNKDTR Trigger: CCGTGTGTCCTTATTCTGTGCCTTGCTGGTCGCCAACCTTCCCCATCTGCCAAGGACTGATGTCCAGCCCAGGCCCAGGTGCAGGTGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | GCCCCAGAGTGGGGCCGGGTCTGCTCAAGAGGGAGTTGGAGAATCTaGAGAAGGGTGGGAAGGAGGTGTGAGAGTCCTCCAGGAACCTAC | + |
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Preference number: 5 (lower is better) Translates to: APEWGRVCSRGSWRI*RRVGRRCESPPGTY Trigger: GTAGGTTCCTGGAGGACTCTCACACCTCCTTCCCACCCTTCTCCAGATTCTCCAACTCCCTCTTGAGCAGACCCGGCCCCACTCTGGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | GGGGCCGGGTCTGCTCAAGAGGGAGTTGGAGAATCTGGAGAAGGGTaGGAAGGAGGTGTGAGAGTCCTCCAGGAACCTACAAGCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: GAGSAQEGVGESGEG*EGGVRVLQEPTSLQ Trigger: CTGGAGGCTTGTAGGTTCCTGGAGGACTCTCACACCTCCTTCCCACCCTTCTCCAGATTCTCCAACTCCCTCTTGAGCAGACCCGGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | ACCTGGGCCTGGGCTGGACATCAGTCCTTGGCAGATGGGGAAGGTTaGCGACCAGCAAGGCACAGAATAAGGACACACGGTCCCAGCAGA | + |
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Preference number: 5 (lower is better) Translates to: TWAWAGHQSLADGEG*RPARHRIRTHGPSR Trigger: TCTGCTGGGACCGTGTGTCCTTATTCTGTGCCTTGCTGGTCGCCAACCTTCCCCATCTGCCAAGGACTGATGTCCAGCCCAGGCCCAGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | CCTTTACTCAGTGGCAAAAATGACCTGGGCACCTGCACCTGGGCCTaGGCTGGACATCAGTCCTTGGCAGATGGGGAAGGTTGGCGACCA | + |
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Preference number: 5 (lower is better) Translates to: PLLSGKNDLGTCTWA*AGHQSLADGEGWRP Trigger: TGGTCGCCAACCTTCCCCATCTGCCAAGGACTGATGTCCAGCCCAGGCCCAGGTGCAGGTGCCCAGGTCATTTTTGCCACTGAGTAAAGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 90 bp | ATGTTGTATGTGTTCACACCACACCTCTTTCCTCCAGGCTGCCCTTaGAGCAGTCCCACTCCTCCTGGGGGTGCAGAGCAGGGGTCCACA | + |
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Preference number: 5 (lower is better) Translates to: MLYVFTPHLFPPGCP*SSPTPPGGAEQGST Trigger: TGTGGACCCCTGCTCTGCACCCCCAGGAGGAGTGGGACTGCTTCAAGGGCAGCCTGGAGGAAAGAGGTGTGGTGTGAACACATACAACAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | TGTCTCCCTTTACTCAGTGGCAAAAATGACCTGGGCACCTGCACCTaGGCCTGGGCTGGACATCAGTCCTTGGCAGATGGGGAAGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: CLPLLSGKNDLGTCT*AWAGHQSLADGEGW Trigger: CCAACCTTCCCCATCTGCCAAGGACTGATGTCCAGCCCAGGCCCAGGTGCAGGTGCCCAGGTCATTTTTGCCACTGAGTAAAGGGAGACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 90 bp | GGAGGTGTGAGAGTCCTCCAGGAACCTACAAGCCTCCAGGTGCCATaGGAGATGGTCCTGGAAAATTGGCCAGCCGAACTTGGTCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: GGVRVLQEPTSLQVP*EMVLENWPAELGLW Trigger: CCAAAGACCAAGTTCGGCTGGCCAATTTTCCAGGACCATCTCTCATGGCACCTGGAGGCTTGTAGGTTCCTGGAGGACTCTCACACCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 90 bp | CTCAAGAGGGAGTTGGAGAATCTGGAGAAGGGTGGGAAGGAGGTGTaGGAGTCCTCCAGGAACCTACAAGCCTCCAGGTGCCATGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: LKRELENLEKGGKEV*ESSRNLQASRCHER Trigger: TCTCTCATGGCACCTGGAGGCTTGTAGGTTCCTGGAGGACTCTCACACCTCCTTCCCACCCTTCTCCAGATTCTCCAACTCCCTCTTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS GCA 90 bp | TCATTCTGTCTCCCTTTACTCAGTGGCAAAAATGACCTGGGCACCTaGACCTGGGCCTGGGCTGGACATCAGTCCTTGGCAGATGGGGAA | + |
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Preference number: 5 (lower is better) Translates to: SFCLPLLSGKNDLGT*TWAWAGHQSLADGE Trigger: TTCCCCATCTGCCAAGGACTGATGTCCAGCCCAGGCCCAGGTGCAGGTGCCCAGGTCATTTTTGCCACTGAGTAAAGGGAGACAGAATGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | TCCTCCAGGAACCTACAAGCCTCCAGGTGCCATGAGAGATGGTCCTaGAAAATTGGCCAGCCGAACTTGGTCTTTGGGACAACCCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: SSRNLQASRCHERWS*KIGQPNLVFGTTQK Trigger: CTTCTGGGTTGTCCCAAAGACCAAGTTCGGCTGGCCAATTTTCCAGGACCATCTCTCATGGCACCTGGAGGCTTGTAGGTTCCTGGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | GGGGTTGCAGGAGAGAACTGGCTCCTTCTAGACAGGGGAATATCGTaGTTAGGGTTCTGGAGTCAGATTCAATCTGGGCTCTGTCACCTA | + |
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Preference number: 5 (lower is better) Translates to: GVAGENWLLLDRGIS*LGFWSQIQSGLCHL Trigger: TAGGTGACAGAGCCCAGATTGAATCTGACTCCAGAACCCTAACCACGATATTCCCCTGTCTAGAAGGAGCCAGTTCTCTCCTGCAACCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 90 bp | TGGGAGGAAAGCTGTCTCCACGCAACAACTCTTGATGTGTTTCTCTaGTTAATGTGGCAGAGAGAACATTGCAGCTTTTTCCTGAATGGT | + |
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Preference number: 5 (lower is better) Translates to: WEESCLHATTLDVFL*LMWQREHCSFFLNG Trigger: ACCATTCAGGAAAAAGCTGCAATGTTCTCTCTGCCACATTAATCAGAGAAACACATCAAGAGTTGTTGCGTGGAGACAGCTTTCCTCCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 90 bp | ATATACTTCACTTGCATTGATGCTATTGGCTCCATGGTGTTCTGGTaGTTGGTAATTTACCCTGTCATTCTGTCTCCCTTTACTCAGTGG | + |
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Preference number: 5 (lower is better) Translates to: IYFTCIDAIGSMVFW*LVIYPVILSPFTQW Trigger: CCACTGAGTAAAGGGAGACAGAATGACAGGGTAAATTACCAACCACCAGAACACCATGGAGCCAATAGCATCAATGCAAGTGAAGTATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 72 bp | CCCCAGCCTGGGTCAGCCAGGCCCTGGCAGAGTGGGTaGCTGTTACGACAGGTCCCAGGAAGGCAGGGTGCC | + |
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Preference number: 6 (lower is better) Translates to: PQPGSARPWQSG*LLRQVPGRQGA Trigger: GGCACCCTGCCTTCCTGGGACCTGTCGTAACAGTCACCCACTCTGCCAGGGCCTGGCTGACCCAGGCTGGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 72 bp | GGCACCTGCACCTGGGCCTGGGCTGGACATCAGTCCTaGGCAGATGGGGAAGGTTGGCGACCAGCAAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GTCTWAWAGHQS*ADGEGWRPARH Trigger: GTGCCTTGCTGGTCGCCAACCTTCCCCATCTGCCAAGGACTGATGTCCAGCCCAGGCCCAGGTGCAGGTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 72 bp | GTGTTCACACCACACCTCTTTCCTCCAGGCTGCCCTTaGAGCAGTCCCACTCCTCCTGGGGGTGCAGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: VFTPHLFPPGCP*SSPTPPGGAEQ Trigger: CTGCTCTGCACCCCCAGGAGGAGTGGGACTGCTTCAAGGGCAGCCTGGAGGAAAGAGGTGTGGTGTGAACAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 90 bp | AATGACCTGGGCACCTGCACCTGGGCCTGGGCTGGACATCAGTCCTaGGCAGATGGGGAAGGTTGGCGACCAGCAAGGCACAGAATAAGG | + |
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Preference number: 6 (lower is better) Translates to: NDLGTCTWAWAGHQS*ADGEGWRPARHRIR Trigger: CCTTATTCTGTGCCTTGCTGGTCGCCAACCTTCCCCATCTGCCAAGGACTGATGTCCAGCCCAGGCCCAGGTGCAGGTGCCCAGGTCATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 72 bp | CACCTGGGCCTGGGCTGGACATCAGTCCTTGGCAGATaGGGAAGGTTGGCGACCAGCAAGGCACAGAATAAG | + |
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Preference number: 6 (lower is better) Translates to: HLGLGWTSVLGR*GRLATSKAQNK Trigger: CTTATTCTGTGCCTTGCTGGTCGCCAACCTTCCCCATCTGCCAAGGACTGATGTCCAGCCCAGGCCCAGGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 90 bp | CATGTTGTATGTGTTCACACCACACCTCTTTCCTCCAGGCTGCCCTaGAAGCAGTCCCACTCCTCCTGGGGGTGCAGAGCAGGGGTCCAC | + |
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Preference number: 6 (lower is better) Translates to: HVVCVHTTPLSSRLP*KQSHSSWGCRAGVH Trigger: GTGGACCCCTGCTCTGCACCCCCAGGAGGAGTGGGACTGCTTCAAGGGCAGCCTGGAGGAAAGAGGTGTGGTGTGAACACATACAACATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 72 bp | TGGGCTGGACATCAGTCCTTGGCAGATGGGGAAGGTTaGCGACCAGCAAGGCACAGAATAAGGACACACGGT | + |
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Preference number: 6 (lower is better) Translates to: WAGHQSLADGEG*RPARHRIRTHG Trigger: ACCGTGTGTCCTTATTCTGTGCCTTGCTGGTCGCCAACCTTCCCCATCTGCCAAGGACTGATGTCCAGCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 72 bp | AACAGAGTGAAACCGCATCTCGCCAGGAGGGGGTGGTaGTTAGTATGCAGGGCGAGTACTGGGAGGAAAGCT | + |
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Preference number: 6 (lower is better) Translates to: NRVKPHLARRGW*LVCRASTGRKA Trigger: AGCTTTCCTCCCAGTACTCGCCCTGCATACTAATCACCACCCCCTCCTGGCGAGATGCGGTTTCACTCTGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 72 bp | CATTCTGTCTCCCTTTACTCAGTGGCAAAAATGACCTaGGCACCTGCACCTGGGCCTGGGCTGGACATCAGT | + |
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Preference number: 6 (lower is better) Translates to: HSVSLYSVAKMT*APAPGPGLDIS Trigger: ACTGATGTCCAGCCCAGGCCCAGGTGCAGGTGCCCAGGTCATTTTTGCCACTGAGTAAAGGGAGACAGAATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 72 bp | CATGACCCGCTGACCAACCTTGGATCTCCCCGTGTCTaGTCTCCTACAGGAACACACCCTCTGTCGTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: HDPLTNLGSPRV*SPTGTHPLSLL Trigger: CAACAACGACAGAGGGTGTGTTCCTGTAGGAGACAAGACACGGGGAGATCCAAGGTTGGTCAGCGGGTCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 72 bp | AAGAACAAGGGGTGGGGGCCTCTAGGCTTGGCTGCTTaGAAACCAGGTAAAGACTCCAGTCGCCTTCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: KNKGWGPLGLAA*KPGKDSSRLPG Trigger: ACCAGGAAGGCGACTGGAGTCTTTACCTGGTTTCAAAGCAGCCAAGCCTAGAGGCCCCCACCCCTTGTTCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 72 bp | AGAGTCCTCCAGGAACCTACAAGCCTCCAGGTGCCATaGGAGATGGTCCTGGAAAATTGGCCAGCCGAACTT | + |
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Preference number: 6 (lower is better) Translates to: RVLQEPTSLQVP*EMVLENWPAEL Trigger: AAGTTCGGCTGGCCAATTTTCCAGGACCATCTCTCATGGCACCTGGAGGCTTGTAGGTTCCTGGAGGACTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 72 bp | AACCTACAAGCCTCCAGGTGCCATGAGAGATGGTCCTaGAAAATTGGCCAGCCGAACTTGGTCTTTGGGACA | + |
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Preference number: 6 (lower is better) Translates to: NLQASRCHERWS*KIGQPNLVFGT Trigger: TGTCCCAAAGACCAAGTTCGGCTGGCCAATTTTCCAGGACCATCTCTCATGGCACCTGGAGGCTTGTAGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 90 bp | GGAACCTACAAGCCTCCAGGTGCCATGAGAGATGGTCCTGGAAAATaGGCCAGCCGAACTTGGTCTTTGGGACAACCCAGAAGAGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: GTYKPPGAMRDGPGK*ASRTWSLGQPRREN Trigger: ATTCTCTCTTCTGGGTTGTCCCAAAGACCAAGTTCGGCTGGCCAATTTTCCAGGACCATCTCTCATGGCACCTGGAGGCTTGTAGGTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 90 bp | TCCAGGTGCCATGAGAGATGGTCCTGGAAAATTGGCCAGCCGAACTaGGTCTTTGGGACAACCCAGAAGAGAGAATTAAGTGGGAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: SRCHERWSWKIGQPN*VFGTTQKRELSGSQ Trigger: CTGACTCCCACTTAATTCTCTCTTCTGGGTTGTCCCAAAGACCAAGTTCGGCTGGCCAATTTTCCAGGACCATCTCTCATGGCACCTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS GCA 72 bp | GTGGCTGGGTATTCTTTGCAGAACCAAGTTGGAGTATaGATGGCTGGGGATCTGGAGAGGAAAGAATTGGGG | + |
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Preference number: 6 (lower is better) Translates to: VAGYSLQNQVGV*MAGDLERKELG Trigger: CCCCAATTCTTTCCTCTCCAGATCCCCAGCCATGCATACTCCAACTTGGTTCTGCAAAGAATACCCAGCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 72 bp | GGAGAGAACTGGCTCCTTCTAGACAGGGGAATATCGTaGTTAGGGTTCTGGAGTCAGATTCAATCTGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: GENWLLLDRGIS*LGFWSQIQSGL Trigger: GAGCCCAGATTGAATCTGACTCCAGAACCCTAACCACGATATTCCCCTGTCTAGAAGGAGCCAGTTCTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 72 bp | GGCCTGAAGAGCTGGGAGACAGTTATGTATAGAAAATaGATGTGCTGGCCGTGCACATGCATGGTGGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: GLKSWETVMYRK*MCWPCTCMVAQ Trigger: TTGAGCCACCATGCATGTGCACGGCCAGCACATTCATTTTCTATACATAACTGTCTCCCAGCTCTTCAGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 72 bp | ATCATAATAAAGAACAAGGGGTGGGGGCCTCTAGGCTaGGCTGCTTTGAAACCAGGTAAAGACTCCAGTCGC | + |
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Preference number: 6 (lower is better) Translates to: IIIKNKGWGPLG*AALKPGKDSSR Trigger: GCGACTGGAGTCTTTACCTGGTTTCAAAGCAGCCAAGCCTAGAGGCCCCCACCCCTTGTTCTTTATTATGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 72 bp | ATGGTCCTGGAAAATTGGCCAGCCGAACTTGGTCTTTaGGACAACCCAGAAGAGAGAATTAAGTGGGAGTCA | + |
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Preference number: 6 (lower is better) Translates to: MVLENWPAELGL*DNPEERIKWES Trigger: TGACTCCCACTTAATTCTCTCTTCTGGGTTGTCCCAAAGACCAAGTTCGGCTGGCCAATTTTCCAGGACCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 72 bp | CATGAGAGATGGTCCTGGAAAATTGGCCAGCCGAACTaGGTCTTTGGGACAACCCAGAAGAGAGAATTAAGT | + |
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Preference number: 6 (lower is better) Translates to: HERWSWKIGQPN*VFGTTQKRELS Trigger: ACTTAATTCTCTCTTCTGGGTTGTCCCAAAGACCAAGTTCGGCTGGCCAATTTTCCAGGACCATCTCTCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 72 bp | TTCACTTGCATTGATGCTATTGGCTCCATGGTGTTCTaGTGGTTGGTAATTTACCCTGTCATTCTGTCTCCC | + |
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Preference number: 6 (lower is better) Translates to: FTCIDAIGSMVF*WLVIYPVILSP Trigger: GGGAGACAGAATGACAGGGTAAATTACCAACCACCAGAACACCATGGAGCCAATAGCATCAATGCAAGTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CCA 72 bp | ACTTGCATTGATGCTATTGGCTCCATGGTGTTCTGGTaGTTGGTAATTTACCCTGTCATTCTGTCTCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: TCIDAIGSMVFW*LVIYPVILSPF Trigger: AAAGGGAGACAGAATGACAGGGTAAATTACCAACCACCAGAACACCATGGAGCCAATAGCATCAATGCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS CAA 72 bp | GTTTTCAGGCCAACAGATAAATATACTTCACTTGCATaGATGCTATTGGCTCCATGGTGTTCTGGTGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: VFRPTDKYTSLA*MLLAPWCSGGW Trigger: CCAACCACCAGAACACCATGGAGCCAATAGCATCAATGCAAGTGAAGTATATTTATCTGTTGGCCTGAAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 72 bp | TTTTCAGGCCAACAGATAAATATACTTCACTTGCATTaGTGCTATTGGCTCCATGGTGTTCTGGTGGTTGGT | + |
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Preference number: 6 (lower is better) Translates to: FSGQQINILHLH*CYWLHGVLVVG Trigger: ACCAACCACCAGAACACCATGGAGCCAATAGCATCAATGCAAGTGAAGTATATTTATCTGTTGGCCTGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS GCA 72 bp | CTAAGTAAGGTAATATACATGGAGCACTTGGCACACTaGCCAATCCATGGCAGCTTAGTTATTTTTATCATT | + |
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Preference number: 6 (lower is better) Translates to: LSKVIYMEHLAH*PIHGSLVIFII Trigger: AATGATAAAAATAACTAAGCTGCCATGGATTGGGCAGTGTGCCAAGTGCTCCATGTATATTACCTTACTTAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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| CDS TCA 72 bp | GCTACTAATCAGATTGATGTAAGTGCCAGGATTAAATaGGAGAGTCTACAAGCTATAAAAAGTGCTATGTGG | + |
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Preference number: 6 (lower is better) Translates to: ATNQIDVSARIK*ESLQAIKSAMW Trigger: CCACATAGCACTTTTTATAGCTTGTAGACTCTCTCATTTAATCCTGGCACTTACATCAATCTGATTAGTAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000500215.3 |
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