Pregenerated sensors for LINC02158 (Homo sapiens)
Ensembl gene IDs: ENSG00000225611Ensembl transcript IDs: ENST00000432377.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCAGAAGATTTAAAATCTCCAGCGCACTCGAGATCGTGCTCGCTTaGATCCAGCCCAGCGCGCCATCAGCGCCTCTGTCACTTTCAGAA | + |
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Preference number: 5 (lower is better) Translates to: SRRFKISSALEIVLA*IQPSAPSAPLSLSE Trigger: TTCTGAAAGTGACAGAGGCGCTGATGGCGCGCTGGGCTGGATCCAAGCGAGCACGATCTCGAGTGCGCTGGAGATTTTAAATCTTCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS GCA 90 bp | AAATATACTCCAGAAGATTTAAAATCTCCAGCGCACTCGAGATCGTaGTCGCTTGGATCCAGCCCAGCGCGCCATCAGCGCCTCTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: KYTPEDLKSPAHSRS*SLGSSPARHQRLCH Trigger: GTGACAGAGGCGCTGATGGCGCGCTGGGCTGGATCCAAGCGAGCACGATCTCGAGTGCGCTGGAGATTTTAAATCTTCTGGAGTATATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS TCA 72 bp | GTTGCCAGGGCAGCGCGTGTCGGCGTCCGGAGGAGGTaGCCTAGCCGCCGCGGTCCTATTGAAGTACATCTT | + |
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Preference number: 6 (lower is better) Translates to: VARAARVGVRRR*PSRRGPIEVHL Trigger: AAGATGTACTTCAATAGGACCGCGGCGGCTAGGTCACCTCCTCCGGACGCCGACACGCGCTGCCCTGGCAAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS CCA 72 bp | GCGCGCCATCAGCGCCTCTGTCACTTTCAGAACTCTTaGCGCCCCCTCGGCCCCCGTAGAGTAGCGTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: ARHQRLCHFQNS*RPLGPRRVALK Trigger: TTTCAACGCTACTCTACGGGGGCCGAGGGGGCGCCAAGAGTTCTGAAAGTGACAGAGGCGCTGATGGCGCGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS GCA 72 bp | CCAGAAGATTTAAAATCTCCAGCGCACTCGAGATCGTaGTCGCTTGGATCCAGCCCAGCGCGCCATCAGCGC | + |
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Preference number: 6 (lower is better) Translates to: PEDLKSPAHSRS*SLGSSPARHQR Trigger: GCGCTGATGGCGCGCTGGGCTGGATCCAAGCGAGCACGATCTCGAGTGCGCTGGAGATTTTAAATCTTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS CCA 72 bp | TTTAAAATCTCCAGCGCACTCGAGATCGTGCTCGCTTaGATCCAGCCCAGCGCGCCATCAGCGCCTCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: FKISSALEIVLA*IQPSAPSAPLS Trigger: TGACAGAGGCGCTGATGGCGCGCTGGGCTGGATCCAAGCGAGCACGATCTCGAGTGCGCTGGAGATTTTAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS CAA 90 bp | GTGGTGCGTCTGGAGTTGTTCATTCCTCCTGGTGGGTTCGTGGTCTaGCTGGCTTCAGGAGTGAAGCTGCAGACCTTCACGGTGAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: VVRLELFIPPGGFVV*LASGVKLQTFTVSV Trigger: AACACTCACCGTGAAGGTCTGCAGCTTCACTCCTGAAGCCAGCAAGACCACGAACCCACCAGGAGGAATGAACAACTCCAGACGCACCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS CCA 72 bp | CAGAGTTTCTTCCTTTTGGTGGGTTCATGGTCTCGCTaGCTCAGGAGTGAAGCTGCAGACCTTCGCGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: QSFFLLVGSWSR*LRSEAADLRGE Trigger: CTCACCGCGAAGGTCTGCAGCTTCACTCCTGAGCCAGCGAGACCATGAACCCACCAAAAGGAAGAAACTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS CAA 72 bp | CTGGAGTTGTTCATTCCTCCTGGTGGGTTCGTGGTCTaGCTGGCTTCAGGAGTGAAGCTGCAGACCTTCACG | + |
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Preference number: 6 (lower is better) Translates to: LELFIPPGGFVV*LASGVKLQTFT Trigger: CGTGAAGGTCTGCAGCTTCACTCCTGAAGCCAGCAAGACCACGAACCCACCAGGAGGAATGAACAACTCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS CAA 72 bp | GTGAGTGTTACAGCTCTTAGGGTGGTGCGTCTGGAGTaGTTCATTCCTCCTGGTGGGTTCGTGGTCTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: VSVTALRVVRLE*FIPPGGFVVLL Trigger: CAGCAAGACCACGAACCCACCAGGAGGAATGAACAACTCCAGACGCACCACCCTAAGAGCTGTAACACTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS CCA 72 bp | AGATGTGTTCAGAGTTTCTTCCTTTTGGTGGGTTCATaGTCTCGCTGGCTCAGGAGTGAAGCTGCAGACCTT | + |
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Preference number: 6 (lower is better) Translates to: RCVQSFFLLVGS*SRWLRSEAADL Trigger: AAGGTCTGCAGCTTCACTCCTGAGCCAGCGAGACCATGAACCCACCAAAAGGAAGAAACTCTGAACACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS CAA 72 bp | CTTCTGATGTCAAGATGTGTTCAGAGTTTCTTCCTTTaGGTGGGTTCATGGTCTCGCTGGCTCAGGAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: LLMSRCVQSFFL*VGSWSRWLRSE Trigger: TTCACTCCTGAGCCAGCGAGACCATGAACCCACCAAAAGGAAGAAACTCTGAACACATCTTGACATCAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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| CDS TCA 72 bp | TTAAAGGTGGCGTGTCTGGAGTTTGTTTCTTCCTTCTaGTGTCAAGATGTGTTCAGAGTTTCTTCCTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: LKVACLEFVSSF*CQDVFRVSSFW Trigger: CCAAAAGGAAGAAACTCTGAACACATCTTGACATCAGAAGGAAGAAACAAACTCCAGACACGCCACCTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432377.1 |
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