Pregenerated sensors for LINC02142 (Homo sapiens)
Ensembl gene IDs: ENSG00000223597Ensembl transcript IDs: ENST00000500616.2, ENST00000655220.1, ENST00000657298.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCTCGGCTCTTGCTCGGAGAACGTGATCTAAAAAGCAATGACTCCTaGCGCCATGGAGACGTGTGCTCAGGATCAGTTGCCTGGAAGCGG | + |
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Preference number: 5 (lower is better) Translates to: SRLLLGERDLKSNDS*RHGDVCSGSVAWKR Trigger: CCGCTTCCAGGCAACTGATCCTGAGCACACGTCTCCATGGCGGCAGGAGTCATTGCTTTTTAGATCACGTTCTCCGAGCAAGAGCCGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657298.1 |
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| CDS GCA 90 bp | TCTCGGCTCTTGCTCGGAGAACGTGATCTAAAAAGCAATGACTCCTaGCGCCATGGAGACGTGTGCTCAGGATCAGTTGCAAAACTTAGC | + |
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Preference number: 5 (lower is better) Translates to: SRLLLGERDLKSNDS*RHGDVCSGSVAKLS Trigger: GCTAAGTTTTGCAACTGATCCTGAGCACACGTCTCCATGGCGGCAGGAGTCATTGCTTTTTAGATCACGTTCTCCGAGCAAGAGCCGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000655220.1 |
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| CDS CCA 90 bp | TGTGCTCAGGATCAGTTGCCTGGAAGCGGGTGTAAGAGAACTTTTTaGGGTAATGGACATGTTCTTTCTCTTGATTGGTGTATACGTTGC | + |
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Preference number: 5 (lower is better) Translates to: CAQDQLPGSGCKRTF*GNGHVLSLDWCIRC Trigger: GCAACGTATACACCAATCAAGAGAAAGAACATGTCCATTACCCCAAAAAGTTCTCTTACACCCGCTTCCAGGCAACTGATCCTGAGCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657298.1 |
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| CDS GCA 90 bp | TTCTTTCTCTTGATTGGTGTATACGTTGCTCCATCCTCATTGCATTaGACACTTAAGATCTCTCAGATGGCCAAAGCACAAGCAGATTTG | + |
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Preference number: 5 (lower is better) Translates to: FFLLIGVYVAPSSLH*TLKISQMAKAQADL Trigger: CAAATCTGCTTGTGCTTTGGCCATCTGAGAGATCTTAAGTGTGCAATGCAATGAGGATGGAGCAACGTATACACCAATCAAGAGAAAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000500616.2 ENST00000655220.1 ENST00000657298.1 |
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| CDS TCA 90 bp | AACCTGATTTGGAGTGACTTACTGAGATTTTTGGCCCTTAACATGTaGGAAGATGGTACTGGTATTTCAGAACAGACCTTTCACAAATGC | + |
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Preference number: 5 (lower is better) Translates to: NLIWSDLLRFLALNM*EDGTGISEQTFHKC Trigger: GCATTTGTGAAAGGTCTGTTCTGAAATACCAGTACCATCTTCTCACATGTTAAGGGCCAAAAATCTCAGTAAGTCACTCCAAATCAGGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000655220.1 ENST00000657298.1 |
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| CDS TCA 72 bp | TGCTCAGGATCAGTTGCAAAACTTAGCCGAGTATGGTaGTGCACCTCTGCGGTCCCAGCTACTCAGAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: CSGSVAKLSRVW*CTSAVPATQKA Trigger: AGCCTTCTGAGTAGCTGGGACCGCAGAGGTGCATCACCATACTCGGCTAAGTTTTGCAACTGATCCTGAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655220.1 |
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| CDS GCA 72 bp | TTGCTCGGAGAACGTGATCTAAAAAGCAATGACTCCTaGCGCCATGGAGACGTGTGCTCAGGATCAGTTGCC | + |
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Preference number: 6 (lower is better) Translates to: LLGERDLKSNDS*RHGDVCSGSVA Trigger: GGCAACTGATCCTGAGCACACGTCTCCATGGCGGCAGGAGTCATTGCTTTTTAGATCACGTTCTCCGAGCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657298.1 |
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| CDS GCA 72 bp | TTGCTCGGAGAACGTGATCTAAAAAGCAATGACTCCTaGCGCCATGGAGACGTGTGCTCAGGATCAGTTGCA | + |
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Preference number: 6 (lower is better) Translates to: LLGERDLKSNDS*RHGDVCSGSVA Trigger: TGCAACTGATCCTGAGCACACGTCTCCATGGCGGCAGGAGTCATTGCTTTTTAGATCACGTTCTCCGAGCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000655220.1 |
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| CDS TCA 72 bp | ATCTTTAAAGCTCCAACATGTGAGGAGGTTCAGCCTTaGGGGGCCTATCAGGAACCAAGAACCACAACATTC | + |
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Preference number: 6 (lower is better) Translates to: IFKAPTCEEVQP*GAYQEPRTTTF Trigger: GAATGTTGTGGTTCTTGGTTCCTGATAGGCCCCTCAAGGCTGAACCTCCTCACATGTTGGAGCTTTAAAGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000500616.2 ENST00000657298.1 |
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| CDS CCA 72 bp | GGGGCATCACCTGGAAGCGGGTGTAAGAGAACTTTTTaGGGTAATGGACATGTTCTTTCTCTTGATTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: GASPGSGCKRTF*GNGHVLSLDWC Trigger: ACACCAATCAAGAGAAAGAACATGTCCATTACCCCAAAAAGTTCTCTTACACCCGCTTCCAGGTGATGCCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000500616.2 |
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| CDS GCA 72 bp | GATGGTACTGGTATTTCAGAACAGACCTTTCACAAATaGCCACTGCCATGGAGAAGTTTAATCCTGGTACTC | + |
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Preference number: 6 (lower is better) Translates to: DGTGISEQTFHK*PLPWRSLILVL Trigger: GAGTACCAGGATTAAACTTCTCCATGGCAGTGGGCATTTGTGAAAGGTCTGTTCTGAAATACCAGTACCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000655220.1 ENST00000657298.1 |
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| CDS CCA 72 bp | GATCAGTTGCCTGGAAGCGGGTGTAAGAGAACTTTTTaGGGTAATGGACATGTTCTTTCTCTTGATTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: DQLPGSGCKRTF*GNGHVLSLDWC Trigger: ACACCAATCAAGAGAAAGAACATGTCCATTACCCCAAAAAGTTCTCTTACACCCGCTTCCAGGCAACTGATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657298.1 |
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| CDS CAA 90 bp | GACATGTTCTTTCTCTTGATTGGTGTATACGTTGCTCCATCCTCATaGCATTGCACACTTAAGATCTCTCAGATGGCCAAAGCACAAGCA | + |
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Preference number: 6 (lower is better) Translates to: DMFFLLIGVYVAPSS*HCTLKISQMAKAQA Trigger: TGCTTGTGCTTTGGCCATCTGAGAGATCTTAAGTGTGCAATGCAATGAGGATGGAGCAACGTATACACCAATCAAGAGAAAGAACATGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000500616.2 ENST00000655220.1 ENST00000657298.1 |
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| CDS GCA 72 bp | TTGATTGGTGTATACGTTGCTCCATCCTCATTGCATTaGACACTTAAGATCTCTCAGATGGCCAAAGCACAA | + |
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Preference number: 6 (lower is better) Translates to: LIGVYVAPSSLH*TLKISQMAKAQ Trigger: TTGTGCTTTGGCCATCTGAGAGATCTTAAGTGTGCAATGCAATGAGGATGGAGCAACGTATACACCAATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000500616.2 ENST00000655220.1 ENST00000657298.1 |
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| CDS CCA 72 bp | ACTTTTTGGGGTAATGGACATGTTCTTTCTCTTGATTaGTGTATACGTTGCTCCATCCTCATTGCATTGCAC | + |
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Preference number: 6 (lower is better) Translates to: TFWGNGHVLSLD*CIRCSILIALH Trigger: GTGCAATGCAATGAGGATGGAGCAACGTATACACCAATCAAGAGAAAGAACATGTCCATTACCCCAAAAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000500616.2 ENST00000655220.1 ENST00000657298.1 |
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| CDS CAA 72 bp | TTTCTCTTGATTGGTGTATACGTTGCTCCATCCTCATaGCATTGCACACTTAAGATCTCTCAGATGGCCAAA | + |
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Preference number: 6 (lower is better) Translates to: FLLIGVYVAPSS*HCTLKISQMAK Trigger: TTTGGCCATCTGAGAGATCTTAAGTGTGCAATGCAATGAGGATGGAGCAACGTATACACCAATCAAGAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000500616.2 ENST00000655220.1 ENST00000657298.1 |
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| CDS CCA 72 bp | TGGGAATACAGAATCCACCCAACCCAAGCCAGTTTATaGCTCTTAGAAGTCAAATTAACTCTTTCAGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: WEYRIHPTQASL*LLEVKLTLSVH Trigger: ATGAACTGAAAGAGTTAATTTGACTTCTAAGAGCCATAAACTGGCTTGGGTTGGGTGGATTCTGTATTCCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000655220.1 ENST00000657298.1 |
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| CDS CAA 90 bp | TTAAGTACTCCTTTGCAGTTCAGTTTCCAAAGCATCAACAAAACGTaGCTGACTGTAAGATTAATATGTTCATTTTCTTGTCCATCCAGT | + |
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Preference number: 6 (lower is better) Translates to: LSTPLQFSFQSINKT*LTVRLICSFSCPSS Trigger: ACTGGATGGACAAGAAAATGAACATATTAATCTTACAGTCAGCAACGTTTTGTTGATGCTTTGGAAACTGAACTGCAAAGGAGTACTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000655220.1 ENST00000657298.1 |
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