Pregenerated sensors for LINC02104 (Homo sapiens)

Ensembl gene IDs: ENSG00000271334

Ensembl transcript IDs: ENST00000603514.2, ENST00000604954.6

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CTTCACGCTGGTTGTGGAGAAAAAGGCACACTTATACACAGTTGGTaGGAGTGTAAATCAGTTCAACCATTTGTGTCCTTTCCATGTGGA	+
Preference number: 5 (lower is better) Translates to: LHAGCGEKGTLIHSW*ECKSVQPFVSFPCG Trigger: TCCACATGGAAAGGACACAAATGGTTGAACTGATTTACACTCCCACCAACTGTGTATAAGTGTGCCTTTTTCTCCACAACCAGCGTGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000604954.6
CDS CCA 90 bp	AGTCTTCACGCTGGTTGTGGAGAAAAAGGCACACTTATACACAGTTaGTGGGAGTGTAAATCAGTTCAACCATTTGTGTCCTTTCCATGT	+
Preference number: 5 (lower is better) Translates to: SLHAGCGEKGTLIHS*WECKSVQPFVSFPC Trigger: ACATGGAAAGGACACAAATGGTTGAACTGATTTACACTCCCACCAACTGTGTATAAGTGTGCCTTTTTCTCCACAACCAGCGTGAAGACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000604954.6
CDS CCA 90 bp	AACAAAGCTGGTTGTGGAGAAAAAGGCACACTTATACACAGTTGGTaGGAGTGTAAATCAGTTCAACCATTTGTGTCCTTTCCATGTGGA	+
Preference number: 5 (lower is better) Translates to: NKAGCGEKGTLIHSW*ECKSVQPFVSFPCG Trigger: TCCACATGGAAAGGACACAAATGGTTGAACTGATTTACACTCCCACCAACTGTGTATAAGTGTGCCTTTTTCTCCACAACCAGCTTTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603514.2
CDS TCA 90 bp	AGAAACCAACAAGCAAGAATATGGTCACTGGTAAAAGTGTCTCATTaGAGAATACCCCCATTGAGGAGCTTGGGTATCAAAGGAGCAATA	+
Preference number: 5 (lower is better) Translates to: RNQQARIWSLVKVSH*RIPPLRSLGIKGAI Trigger: TATTGCTCCTTTGATACCCAAGCTCCTCAATGGGGGTATTCTTCAATGAGACACTTTTACCAGTGACCATATTCTTGCTTGTTGGTTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000603514.2 ENST00000604954.6
CDS CCA 90 bp	GTTAACAAAGCTGGTTGTGGAGAAAAAGGCACACTTATACACAGTTaGTGGGAGTGTAAATCAGTTCAACCATTTGTGTCCTTTCCATGT	+
Preference number: 5 (lower is better) Translates to: VNKAGCGEKGTLIHS*WECKSVQPFVSFPC Trigger: ACATGGAAAGGACACAAATGGTTGAACTGATTTACACTCCCACCAACTGTGTATAAGTGTGCCTTTTTCTCCACAACCAGCTTTGTTAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603514.2
CDS CAA 72 bp	GAAGGCAGTGTGGCGATTCCTCAAAGACCAAGCAATTaGTTTCCGAACTTTTTCGTGGCTCCGGCTATAGCC	+
Preference number: 6 (lower is better) Translates to: EGSVAIPQRPSN*FPNFFVAPAIA Trigger: GGCTATAGCCGGAGCCACGAAAAAGTTCGGAAACAAATTGCTTGGTCTTTGAGGAATCGCCACACTGCCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000603514.2 ENST00000604954.6
CDS CCA 72 bp	TCAACCATTTGTGTCCTTTCCATGTGGAAGGCAGTGTaGCGATTCCTCAAAGACCAAGCAATTTGTTTCCGA	+
Preference number: 6 (lower is better) Translates to: STICVLSMWKAV*RFLKDQAICFR Trigger: TCGGAAACAAATTGCTTGGTCTTTGAGGAATCGCCACACTGCCTTCCACATGGAAAGGACACAAATGGTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000603514.2 ENST00000604954.6
CDS CCA 72 bp	GCTGGTTGTGGAGAAAAAGGCACACTTATACACAGTTaGTGGGAGTGTAAATCAGTTCAACCATTTGTGTCC	+
Preference number: 6 (lower is better) Translates to: AGCGEKGTLIHS*WECKSVQPFVS Trigger: GGACACAAATGGTTGAACTGATTTACACTCCCACCAACTGTGTATAAGTGTGCCTTTTTCTCCACAACCAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000603514.2 ENST00000604954.6
CDS TCA 72 bp	CAAGCAAGAATATGGTCACTGGTAAAAGTGTCTCATTaGAGAATACCCCCATTGAGGAGCTTGGGTATCAAA	+
Preference number: 6 (lower is better) Translates to: QARIWSLVKVSH*RIPPLRSLGIK Trigger: TTTGATACCCAAGCTCCTCAATGGGGGTATTCTTCAATGAGACACTTTTACCAGTGACCATATTCTTGCTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000603514.2 ENST00000604954.6
CDS CCA 72 bp	GGTTGTGGAGAAAAAGGCACACTTATACACAGTTGGTaGGAGTGTAAATCAGTTCAACCATTTGTGTCCTTT	+
Preference number: 6 (lower is better) Translates to: GCGEKGTLIHSW*ECKSVQPFVSF Trigger: AAAGGACACAAATGGTTGAACTGATTTACACTCCCACCAACTGTGTATAAGTGTGCCTTTTTCTCCACAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000603514.2 ENST00000604954.6
CDS CAA 90 bp	AAGAAACCAACAAGCAAGAATATGGTCACTGGTAAAAGTGTCTCATaGAAGAATACCCCCATTGAGGAGCTTGGGTATCAAAGGAGCAAT	+
Preference number: 6 (lower is better) Translates to: KKPTSKNMVTGKSVS*KNTPIEELGYQRSN Trigger: ATTGCTCCTTTGATACCCAAGCTCCTCAATGGGGGTATTCTTCAATGAGACACTTTTACCAGTGACCATATTCTTGCTTGTTGGTTTCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000603514.2 ENST00000604954.6

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