Pregenerated sensors for LINC02082 (Homo sapiens)
Ensembl gene IDs: ENSG00000242268Ensembl transcript IDs: ENST00000484765.2, ENST00000664865.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTTAAACTAGTGGCCAGCACCATTCAATTGGTACAGGACGTATGTTaGATTCAAAGTCATGTTTCTGCGAAATTCTTCCTCCTGTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: VKLVASTIQLVQDVC*IQSHVSAKFFLLCV Trigger: CACACACAGGAGGAAGAATTTCGCAGAAACATGACTTTGAATCCAACATACGTCCTGTACCAATTGAATGGTGCTGGCCACTAGTTTAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS TCA 90 bp | CTTCTCAGAATTAGAGACTTCAGTAGAGCTTTAGTGGTTGCATCGTaGAGGACACAGGGAAAGTTGGATAGTTGTCTTGAGGTCAGAAAA | + |
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Preference number: 5 (lower is better) Translates to: LLRIRDFSRALVVAS*RTQGKLDSCLEVRK Trigger: TTTTCTGACCTCAAGACAACTATCCAACTTTCCCTGTGTCCTTCACGATGCAACCACTAAAGCTCTACTGAAGTCTCTAATTCTGAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000484765.2 ENST00000664865.1 |
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| CDS GCA 90 bp | ATTTACGGGTATAGATTTTCATCCTCGATGGTAGTGTTTTATAATTaGATGCATGCTGTAGTCAAGAACGTGGCCTCTGGAATGAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: IYGYRFSSSMVVFYN*MHAVVKNVASGMRQ Trigger: TTGCCTCATTCCAGAGGCCACGTTCTTGACTACAGCATGCATGCAATTATAAAACACTACCATCGAGGATGAAAATCTATACCCGTAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000484765.2 ENST00000664865.1 |
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| CDS TCA 90 bp | TTCACATTAACCCATAAGGTAGATAGAACATCATTATTCCCTTCCTaGGACAGATGTGTTAAACTAGTGGCCAGCACCATTCAATTGGTA | + |
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Preference number: 5 (lower is better) Translates to: FTLTHKVDRTSLFPS*DRCVKLVASTIQLV Trigger: TACCAATTGAATGGTGCTGGCCACTAGTTTAACACATCTGTCTCAGGAAGGGAATAATGATGTTCTATCTACCTTATGGGTTAATGTGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS TCA 72 bp | GGTTTCACCATATTGGCCAGGTTGGTCTCGATCTCTTaGCCTCATGATCTGCCCACCTCAATCTTCCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: GFTILARLVSIS*PHDLPTSIFQS Trigger: ACTTTGGAAGATTGAGGTGGGCAGATCATGAGGTCAAGAGATCGAGACCAACCTGGCCAATATGGTGAAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS CAA 72 bp | AGTGTGCTTGGATCACAAAACTGCCCAGAGGTAGAGTaGGGACGCAAGCTAAGGTTTCCTAAGTCCAAGACT | + |
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Preference number: 6 (lower is better) Translates to: SVLGSQNCPEVE*GRKLRFPKSKT Trigger: AGTCTTGGACTTAGGAAACCTTAGCTTGCGTCCCAACTCTACCTCTGGGCAGTTTTGTGATCCAAGCACACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS TCA 72 bp | GGGTGGCAGAAGGTTTCTCCTTCACAGTCACAAAGTTaGTGGCAATCATCTCCAAACATGCCAGGTGAATAT | + |
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Preference number: 6 (lower is better) Translates to: GWQKVSPSQSQS*WQSSPNMPGEY Trigger: ATATTCACCTGGCATGTTTGGAGATGATTGCCATCAACTTTGTGACTGTGAAGGAGAAACCTTCTGCCACCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000484765.2 ENST00000664865.1 |
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| CDS CAA 90 bp | AAAAGATTAAGTGTGCTTGGATCACAAAACTGCCCAGAGGTAGAGTaGGGACGCAAGCTAAGGTTTCCTAAGTCCAAGACTGAGGCAAAT | + |
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Preference number: 6 (lower is better) Translates to: KRLSVLGSQNCPEVE*GRKLRFPKSKTEAN Trigger: ATTTGCCTCAGTCTTGGACTTAGGAAACCTTAGCTTGCGTCCCAACTCTACCTCTGGGCAGTTTTGTGATCCAAGCACACTTAATCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS CCA 72 bp | GTGGCCAGCACCATTCAATTGGTACAGGACGTATGTTaGATTCAAAGTCATGTTTCTGCGAAATTCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: VASTIQLVQDVC*IQSHVSAKFFL Trigger: GAGGAAGAATTTCGCAGAAACATGACTTTGAATCCAACATACGTCCTGTACCAATTGAATGGTGCTGGCCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS TCA 72 bp | ATTAGAGACTTCAGTAGAGCTTTAGTGGTTGCATCGTaGAGGACACAGGGAAAGTTGGATAGTTGTCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: IRDFSRALVVAS*RTQGKLDSCLE Trigger: CTCAAGACAACTATCCAACTTTCCCTGTGTCCTTCACGATGCAACCACTAAAGCTCTACTGAAGTCTCTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000484765.2 ENST00000664865.1 |
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| CDS GCA 72 bp | AAGTTCAAAAGATTAAGTGTGCTTGGATCACAAAACTaGCCAGAGGTAGAGTTGGGACGCAAGCTAAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: KFKRLSVLGSQN*PEVELGRKLRF Trigger: AAACCTTAGCTTGCGTCCCAACTCTACCTCTGGGCAGTTTTGTGATCCAAGCACACTTAATCTTTTGAACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS CAA 72 bp | CACCCAAGGCCACAGATAGACCTTCTATCTGCAGAATaGCAAAGGCCACCATTTTTACAAGTACATTTTAGC | + |
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Preference number: 6 (lower is better) Translates to: HPRPQIDLLSAE*QRPPFLQVHFS Trigger: GCTAAAATGTACTTGTAAAAATGGTGGCCTTTGCAATTCTGCAGATAGAAGGTCTATCTGTGGCCTTGGGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS CAA 72 bp | AGTGGCCAGCACCATTCAATTGGTACAGGACGTATGTaGGATTCAAAGTCATGTTTCTGCGAAATTCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SGQHHSIGTGRM*DSKSCFCEILP Trigger: AGGAAGAATTTCGCAGAAACATGACTTTGAATCCAACATACGTCCTGTACCAATTGAATGGTGCTGGCCACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS CAA 72 bp | GACAGATGTGTTAAACTAGTGGCCAGCACCATTCAATaGGTACAGGACGTATGTTGGATTCAAAGTCATGTT | + |
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Preference number: 6 (lower is better) Translates to: DRCVKLVASTIQ*VQDVCWIQSHV Trigger: AACATGACTTTGAATCCAACATACGTCCTGTACCAATTGAATGGTGCTGGCCACTAGTTTAACACATCTGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664865.1 |
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| CDS GCA 72 bp | CACAGTCACAAAGTTGATGGCAATCATCTCCAAACATaGCAGGTGAATATGGAAAATAGCTTCTTCACAAGT | + |
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Preference number: 6 (lower is better) Translates to: HSHKVDGNHLQT*QVNMENSFFTS Trigger: ACTTGTGAAGAAGCTATTTTCCATATTCACCTGGCATGTTTGGAGATGATTGCCATCAACTTTGTGACTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000484765.2 ENST00000664865.1 |
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