Pregenerated sensors for LINC02078 (Homo sapiens)
Ensembl gene IDs: ENSG00000267719Ensembl transcript IDs: ENST00000592718.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGCTGCTGTTTGCCTCTCTGTGGTGTCGCCTCGCCCCGTGTCTCCTaGAAATGGAAGCTGTGCCGCAGAAACGCCCTTAGATTCAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: RCCLPLCGVASPRVS*KWKLCRRNALRFRL Trigger: GAGCCTGAATCTAAGGGCGTTTCTGCGGCACAGCTTCCATTTGCAGGAGACACGGGGCGAGGCGACACCACAGAGAGGCAAACAGCAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS GCA 90 bp | CTCTGTGGTGTCGCCTCGCCCCGTGTCTCCTGCAAATGGAAGCTGTaGCGCAGAAACGCCCTTAGATTCAGGCTCATCTTTCTTTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: LCGVASPRVSCKWKL*RRNALRFRLIFLCQ Trigger: CTGGCAAAGAAAGATGAGCCTGAATCTAAGGGCGTTTCTGCGGCACAGCTTCCATTTGCAGGAGACACGGGGCGAGGCGACACCACAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CCA 90 bp | CTTGTGATTTGTTGCAGAAACCAGATCAGCTGTCCTGCAAATGTGTaGCCTATCGCGCTGCTGTTTGCCTCTCTGTGGTGTCGCCTCGCC | + |
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Preference number: 5 (lower is better) Translates to: LVICCRNQISCPANV*PIALLFASLWCRLA Trigger: GGCGAGGCGACACCACAGAGAGGCAAACAGCAGCGCGATAGGCCACACATTTGCAGGACAGCTGATCTGGTTTCTGCAACAAATCACAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CCA 90 bp | CATCCAGAATCACATTCCCCTGATTGTTTGCTTACGTCCATCAGATaGAACACACAGGTTCCTAACAAGGCCCAAAGTTTAAGTTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: HPESHSPDCLLTSIR*NTQVPNKAQSLSFV Trigger: CACAAAACTTAAACTTTGGGCCTTGTTAGGAACCTGTGTGTTCCATCTGATGGACGTAAGCAAACAATCAGGGGAATGTGATTCTGGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS GCA 72 bp | CTGTCCTGCAAATGTGTGGCCTATCGCGCTGCTGTTTaGCTCTCTGTGGTGTCGCCTCGCCCCGTGTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LSCKCVAYRAAV*LSVVSPRPVSP Trigger: AGGAGACACGGGGCGAGGCGACACCACAGAGAGGCAAACAGCAGCGCGATAGGCCACACATTTGCAGGACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS GCA 72 bp | TTGCCTCTCTGTGGTGTCGCCTCGCCCCGTGTCTCCTaGAAATGGAAGCTGTGCCGCAGAAACGCCCTTAGA | + |
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Preference number: 6 (lower is better) Translates to: LPLCGVASPRVS*KWKLCRRNALR Trigger: TCTAAGGGCGTTTCTGCGGCACAGCTTCCATTTGCAGGAGACACGGGGCGAGGCGACACCACAGAGAGGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CCA 72 bp | CTCTGTGGTGTCGCCTCGCCCCGTGTCTCCTGCAAATaGAAGCTGTGCCGCAGAAACGCCCTTAGATTCAGG | + |
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Preference number: 6 (lower is better) Translates to: LCGVASPRVSCK*KLCRRNALRFR Trigger: CCTGAATCTAAGGGCGTTTCTGCGGCACAGCTTCCATTTGCAGGAGACACGGGGCGAGGCGACACCACAGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS TCA 72 bp | GCCGCCCCCGACCCCCATTGCTCCTCCCACCACTTGTaGTTTGTTGCAGAAACCAGATCAGCTGTCCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: AAPDPHCSSHHL*FVAETRSAVLQ Trigger: TTGCAGGACAGCTGATCTGGTTTCTGCAACAAATCACAAGTGGTGGGAGGAGCAATGGGGGTCGGGGGCGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS TCA 72 bp | CAAGGCCCAAAGTTTAAGTTTTGTGGTGGCGCCTCTTaGACCTCTCTTACTCTAGATCAGGCGCCGCCCCCG | + |
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Preference number: 6 (lower is better) Translates to: QGPKFKFCGGAS*TSLTLDQAPPP Trigger: CGGGGGCGGCGCCTGATCTAGAGTAAGAGAGGTTCAAGAGGCGCCACCACAAAACTTAAACTTTGGGCCTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CAA 72 bp | CCCCCGACCCCCATTGCTCCTCCCACCACTTGTGATTaGTTGCAGAAACCAGATCAGCTGTCCTGCAAATGT | + |
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Preference number: 6 (lower is better) Translates to: PPTPIAPPTTCD*LQKPDQLSCKC Trigger: ACATTTGCAGGACAGCTGATCTGGTTTCTGCAACAAATCACAAGTGGTGGGAGGAGCAATGGGGGTCGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS GCA 72 bp | CGACCCCCATTGCTCCTCCCACCACTTGTGATTTGTTaGAGAAACCAGATCAGCTGTCCTGCAAATGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: RPPLLLPPLVIC*RNQISCPANVW Trigger: CCACACATTTGCAGGACAGCTGATCTGGTTTCTGCAACAAATCACAAGTGGTGGGAGGAGCAATGGGGGTCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CCA 72 bp | TGTTGCAGAAACCAGATCAGCTGTCCTGCAAATGTGTaGCCTATCGCGCTGCTGTTTGCCTCTCTGTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: CCRNQISCPANV*PIALLFASLWC Trigger: ACACCACAGAGAGGCAAACAGCAGCGCGATAGGCCACACATTTGCAGGACAGCTGATCTGGTTTCTGCAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CAA 72 bp | CCGACCCCCATTGCTCCTCCCACCACTTGTGATTTGTaGCAGAAACCAGATCAGCTGTCCTGCAAATGTGTG | + |
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Preference number: 6 (lower is better) Translates to: PTPIAPPTTCDL*QKPDQLSCKCV Trigger: CACACATTTGCAGGACAGCTGATCTGGTTTCTGCAACAAATCACAAGTGGTGGGAGGAGCAATGGGGGTCGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CAA 72 bp | GGTCATAGCCCGGATCCACCCTGTGATGCCCTAGTTTaGTCATTACTGATCTCATCCATGACCCTTGCGAGA | + |
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Preference number: 6 (lower is better) Translates to: GHSPDPPCDALV*SLLISSMTLAR Trigger: TCTCGCAAGGGTCATGGATGAGATCAGTAATGACAAAACTAGGGCATCACAGGGTGGATCCGGGCTATGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS GCA 72 bp | ACTTGTGATTTGTTGCAGAAACCAGATCAGCTGTCCTaGAAATGTGTGGCCTATCGCGCTGCTGTTTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: TCDLLQKPDQLS*KCVAYRAAVCL Trigger: GAGGCAAACAGCAGCGCGATAGGCCACACATTTGCAGGACAGCTGATCTGGTTTCTGCAACAAATCACAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CCA 72 bp | TCCCTTAGGGCAATGTTCAAATTAACAGTCATTCCTTaGCACCCGCTCAGGCCCCATCCAGAATCACATTCC | + |
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Preference number: 6 (lower is better) Translates to: SLRAMFKLTVIP*HPLRPHPESHS Trigger: GGAATGTGATTCTGGATGGGGCCTGAGCGGGTGCCAAGGAATGACTGTTAATTTGAACATTGCCCTAAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CCA 72 bp | TCACATTCCCCTGATTGTTTGCTTACGTCCATCAGATaGAACACACAGGTTCCTAACAAGGCCCAAAGTTTA | + |
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Preference number: 6 (lower is better) Translates to: SHSPDCLLTSIR*NTQVPNKAQSL Trigger: TAAACTTTGGGCCTTGTTAGGAACCTGTGTGTTCCATCTGATGGACGTAAGCAAACAATCAGGGGAATGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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| CDS CCA 72 bp | AATGTTCTGAATAGAGTTGGAGGCTTGTTTTTCCAGTaGATTACCGATGGGTTTTGGTTTGCTTTCTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: NVLNRVGGLFFQ*ITDGFWFAFSL Trigger: AAGAGAGAAAGCAAACCAAAACCCATCGGTAATCCACTGGAAAAACAAGCCTCCAACTCTATTCAGAACATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000592718.1 |
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