Pregenerated sensors for LINC02047 (Homo sapiens)
Ensembl gene IDs: ENSG00000239454Ensembl transcript IDs: ENST00000494761.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AACAGGCCATGGCAACAGCCCAGAGCCATGGTGCTTTTGTTCCATTaGTATGTTTTCTGTGCAGTACTCACACTTTCCAGACTGGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: NRPWQQPRAMVLLFH*YVFCAVLTLSRLEP Trigger: AGGCTCCAGTCTGGAAAGTGTGAGTACTGCACAGAAAACATAGCAATGGAACAAAAGCACCATGGCTCTGGGCTGTTGCCATGGCCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS GCA 90 bp | CAGTACTCACACTTTCCAGACTGGAGCCTTCCAGTACAGAATTTATaGTTGTGTATCTCTATGGGACAGTCATCAAGTGTGCCTGTCACC | + |
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Preference number: 5 (lower is better) Translates to: QYSHFPDWSLPVQNL*LCISMGQSSSVPVT Trigger: GGTGACAGGCACACTTGATGACTGTCCCATAGAGATACACAAGCATAAATTCTGTACTGGAAGGCTCCAGTCTGGAAAGTGTGAGTACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS GCA 90 bp | ACAGCCCAGAGCCATGGTGCTTTTGTTCCATTGCTATGTTTTCTGTaGAGTACTCACACTTTCCAGACTGGAGCCTTCCAGTACAGAATT | + |
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Preference number: 5 (lower is better) Translates to: TAQSHGAFVPLLCFL*STHTFQTGAFQYRI Trigger: AATTCTGTACTGGAAGGCTCCAGTCTGGAAAGTGTGAGTACTGCACAGAAAACATAGCAATGGAACAAAAGCACCATGGCTCTGGGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS CCA 90 bp | CAGACTGGAGCCTTCCAGTACAGAATTTATGCTTGTGTATCTCTATaGGACAGTCATCAAGTGTGCCTGTCACCAAAGCAGAAATCATCA | + |
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Preference number: 5 (lower is better) Translates to: QTGAFQYRIYACVSL*DSHQVCLSPKQKSS Trigger: TGATGATTTCTGCTTTGGTGACAGGCACACTTGATGACTGTCCCATAGAGATACACAAGCATAAATTCTGTACTGGAAGGCTCCAGTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS GCA 72 bp | TATTTTCGCCCAGTTGTGGAGGCTGGAAGTTCAAGATaGAGATGTCAGCAGTCCTGGTTTCTCCTGAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: YFRPVVEAGSSR*RCQQSWFLLRP Trigger: CGGCCTCAGGAGAAACCAGGACTGCTGACATCTGCATCTTGAACTTCCAGCCTCCACAACTGGGCGAAAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS CAA 90 bp | GAACAGGCCATGGCAACAGCCCAGAGCCATGGTGCTTTTGTTCCATaGCTATGTTTTCTGTGCAGTACTCACACTTTCCAGACTGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: EQAMATAQSHGAFVP*LCFLCSTHTFQTGA Trigger: GGCTCCAGTCTGGAAAGTGTGAGTACTGCACAGAAAACATAGCAATGGAACAAAAGCACCATGGCTCTGGGCTGTTGCCATGGCCTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS CAA 72 bp | AACAGGCCATGGCAACAGCCCAGAGCCATGGTGCTTTaGTTCCATTGCTATGTTTTCTGTGCAGTACTCACA | + |
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Preference number: 6 (lower is better) Translates to: NRPWQQPRAMVL*FHCYVFCAVLT Trigger: TGTGAGTACTGCACAGAAAACATAGCAATGGAACAAAAGCACCATGGCTCTGGGCTGTTGCCATGGCCTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS CAA 90 bp | TACTCACACTTTCCAGACTGGAGCCTTCCAGTACAGAATTTATGCTaGTGTATCTCTATGGGACAGTCATCAAGTGTGCCTGTCACCAAA | + |
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Preference number: 6 (lower is better) Translates to: YSHFPDWSLPVQNLC*CISMGQSSSVPVTK Trigger: TTTGGTGACAGGCACACTTGATGACTGTCCCATAGAGATACACAAGCATAAATTCTGTACTGGAAGGCTCCAGTCTGGAAAGTGTGAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS TCA 72 bp | TTGAACAAATTCTGGAACCCTGCTCCAAGGCCAAACTaGAAAATAGACCTTGAGGATGAGGCAACTCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: LNKFWNPAPRPN*KIDLEDEATLV Trigger: AACCAGAGTTGCCTCATCCTCAAGGTCTATTTTTCAGTTTGGCCTTGGAGCAGGGTTCCAGAATTTGTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS GCA 72 bp | CACTTTCCAGACTGGAGCCTTCCAGTACAGAATTTATaGTTGTGTATCTCTATGGGACAGTCATCAAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: HFPDWSLPVQNL*LCISMGQSSSV Trigger: CACACTTGATGACTGTCCCATAGAGATACACAAGCATAAATTCTGTACTGGAAGGCTCCAGTCTGGAAAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS CAA 72 bp | TTTCCAGACTGGAGCCTTCCAGTACAGAATTTATGCTaGTGTATCTCTATGGGACAGTCATCAAGTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: FPDWSLPVQNLC*CISMGQSSSVP Trigger: AGGCACACTTGATGACTGTCCCATAGAGATACACAAGCATAAATTCTGTACTGGAAGGCTCCAGTCTGGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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| CDS CCA 72 bp | GCTATGTTTTCTGTGCAGTACTCACACTTTCCAGACTaGAGCCTTCCAGTACAGAATTTATGCTTGTGTATC | + |
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Preference number: 6 (lower is better) Translates to: AMFSVQYSHFPD*SLPVQNLCLCI Trigger: GATACACAAGCATAAATTCTGTACTGGAAGGCTCCAGTCTGGAAAGTGTGAGTACTGCACAGAAAACATAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494761.1 |
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