Pregenerated sensors for LINC01997 (Homo sapiens)
Ensembl gene IDs: ENSG00000241383Ensembl transcript IDs: ENST00000494900.1, ENST00000650951.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCAAGTCAAATACTTTGGACCGTCAACCAATGGTGCCAGGGGTTTTaGGAGATCCATGACATAGAACATCCAGTCCTTGCTTGTAGATGT | + |
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Preference number: 5 (lower is better) Translates to: ASQILWTVNQWCQGF*EIHDIEHPVLACRC Trigger: ACATCTACAAGCAAGGACTGGATGTTCTATGTCATGGATCTCCCAAAACCCCTGGCACCATTGGTTGACGGTCCAAAGTATTTGACTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000494900.1 ENST00000650951.1 |
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| CDS CCA 90 bp | CCAAAGCTTCTAGGAGGGAAAGATTCTTTAGCAAGTCAAATACTTTaGACCGTCAACCAATGGTGCCAGGGGTTTTGGGAGATCCATGAC | + |
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Preference number: 5 (lower is better) Translates to: PKLLGGKDSLASQIL*TVNQWCQGFWEIHD Trigger: GTCATGGATCTCCCAAAACCCCTGGCACCATTGGTTGACGGTCCAAAGTATTTGACTTGCTAAAGAATCTTTCCCTCCTAGAAGCTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650951.1 |
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| CDS CCA 90 bp | GGGAAAGATTCTTTAGCAAGTCAAATACTTTGGACCGTCAACCAATaGTGCCAGGGGTTTTGGGAGATCCATGACATAGAACATCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: GKDSLASQILWTVNQ*CQGFWEIHDIEHPV Trigger: GACTGGATGTTCTATGTCATGGATCTCCCAAAACCCCTGGCACCATTGGTTGACGGTCCAAAGTATTTGACTTGCTAAAGAATCTTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000494900.1 ENST00000650951.1 |
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| CDS GCA 90 bp | AAAGATTCTTTAGCAAGTCAAATACTTTGGACCGTCAACCAATGGTaGCAGGGGTTTTGGGAGATCCATGACATAGAACATCCAGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: KDSLASQILWTVNQW*QGFWEIHDIEHPVL Trigger: AAGGACTGGATGTTCTATGTCATGGATCTCCCAAAACCCCTGGCACCATTGGTTGACGGTCCAAAGTATTTGACTTGCTAAAGAATCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000494900.1 ENST00000650951.1 |
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| CDS CCA 90 bp | TTTATACTTCTAGGAGGGAAAGATTCTTTAGCAAGTCAAATACTTTaGACCGTCAACCAATGGTGCCAGGGGTTTTGGGAGATCCATGAC | + |
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Preference number: 5 (lower is better) Translates to: FILLGGKDSLASQIL*TVNQWCQGFWEIHD Trigger: GTCATGGATCTCCCAAAACCCCTGGCACCATTGGTTGACGGTCCAAAGTATTTGACTTGCTAAAGAATCTTTCCCTCCTAGAAGTATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000494900.1 |
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| CDS CCA 90 bp | TTGTTTATGGTGAAAAGAAGGGGTCCTGTTTCAATCTTCTGCATATaGCTAGCCAGTTATCCTAGAAATCAATGGAAGACTCTGATATTA | + |
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Preference number: 5 (lower is better) Translates to: LFMVKRRGPVSIFCI*LASYPRNQWKTLIL Trigger: TAATATCAGAGTCTTCCATTGATTTCTAGGATAACTGGCTAGCCATATGCAGAAGATTGAAACAGGACCCCTTCTTTTCACCATAAACAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650951.1 |
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| CDS CCA 72 bp | CTAGGAGGGAAAGATTCTTTAGCAAGTCAAATACTTTaGACCGTCAACCAATGGTGCCAGGGGTTTTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LGGKDSLASQIL*TVNQWCQGFWE Trigger: CTCCCAAAACCCCTGGCACCATTGGTTGACGGTCCAAAGTATTTGACTTGCTAAAGAATCTTTCCCTCCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000494900.1 ENST00000650951.1 |
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| CDS CAA 72 bp | TCTAGGAGGGAAAGATTCTTTAGCAAGTCAAATACTTaGGACCGTCAACCAATGGTGCCAGGGGTTTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: SRRERFFSKSNT*DRQPMVPGVLG Trigger: TCCCAAAACCCCTGGCACCATTGGTTGACGGTCCAAAGTATTTGACTTGCTAAAGAATCTTTCCCTCCTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000494900.1 ENST00000650951.1 |
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| CDS GCA 72 bp | TTAGCAAGTCAAATACTTTGGACCGTCAACCAATGGTaGCAGGGGTTTTGGGAGATCCATGACATAGAACAT | + |
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Preference number: 6 (lower is better) Translates to: LASQILWTVNQW*QGFWEIHDIEH Trigger: ATGTTCTATGTCATGGATCTCCCAAAACCCCTGGCACCATTGGTTGACGGTCCAAAGTATTTGACTTGCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000494900.1 ENST00000650951.1 |
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| CDS CCA 72 bp | TCTTTAGCAAGTCAAATACTTTGGACCGTCAACCAATaGTGCCAGGGGTTTTGGGAGATCCATGACATAGAA | + |
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Preference number: 6 (lower is better) Translates to: SLASQILWTVNQ*CQGFWEIHDIE Trigger: TTCTATGTCATGGATCTCCCAAAACCCCTGGCACCATTGGTTGACGGTCCAAAGTATTTGACTTGCTAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000494900.1 ENST00000650951.1 |
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| CDS GCA 72 bp | TTTATGGTGAAAAGAAGGGGTCCTGTTTCAATCTTCTaGATATGGCTAGCCAGTTATCCTAGAAATCAATGG | + |
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Preference number: 6 (lower is better) Translates to: FMVKRRGPVSIF*IWLASYPRNQW Trigger: CCATTGATTTCTAGGATAACTGGCTAGCCATATGCAGAAGATTGAAACAGGACCCCTTCTTTTCACCATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650951.1 |
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