Pregenerated sensors for LINC01994 (Homo sapiens)
Ensembl gene IDs: ENSG00000241098Ensembl transcript IDs: ENST00000496220.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGTTCTCACTGGCTTAGACTGACACAAGAGCAGGGGCAGGATCCCTaGAACCAGGATACTGGGAAGCGATGGGAGGGGTGGACGATAAAA | + |
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Preference number: 5 (lower is better) Translates to: SSHWLRLTQEQGQDP*NQDTGKRWEGWTIK Trigger: TTTTATCGTCCACCCCTCCCATCGCTTCCCAGTATCCTGGTTGCAGGGATCCTGCCCCTGCTCTTGTGTCAGTCTAAGCCAGTGAGAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CCA 90 bp | ATAAGCCTACCTGCATGCACAGACAGATCCTGTAAAGCACAGCAGTaGGGCGGCATACAGAGCTGTCCGGCACATGGCCATCTTTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: ISLPACTDRSCKAQQ*GGIQSCPAHGHLFA Trigger: TGCAAAAAGATGGCCATGTGCCGGACAGCTCTGTATGCCGCCCCACTGCTGTGCTTTACAGGATCTGTCTGTGCATGCAGGTAGGCTTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CCA 90 bp | CTGTTCTCCACCATGAATAAATTCTCTAGCGTGAACAGTTCTCACTaGCTTAGACTGACACAAGAGCAGGGGCAGGATCCCTGCAACCAG | + |
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Preference number: 5 (lower is better) Translates to: LFSTMNKFSSVNSSH*LRLTQEQGQDPCNQ Trigger: CTGGTTGCAGGGATCCTGCCCCTGCTCTTGTGTCAGTCTAAGCCAGTGAGAACTGTTCACGCTAGAGAATTTATTCATGGTGGAGAACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS GCA 90 bp | GGTCCTGATACCCAGAGGAGTGCTGCTTTCAATTTCCATATGTTATaGAGTAAGCGGAGTCATTTAAGAAGCGAGGTACTCAGGGAGATG | + |
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Preference number: 5 (lower is better) Translates to: GPDTQRSAAFNFHML*SKRSHLRSEVLREM Trigger: CATCTCCCTGAGTACCTCGCTTCTTAAATGACTCCGCTTACTGCATAACATATGGAAATTGAAAGCAGCACTCCTCTGGGTATCAGGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS TCA 90 bp | GCTTCTTGTCCCTGCACCTTTAGGTTTTATAGGATTCAGAGGTCCTaGTACCCAGAGGAGTGCTGCTTTCAATTTCCATATGTTATGCAG | + |
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Preference number: 5 (lower is better) Translates to: ASCPCTFRFYRIQRS*YPEECCFQFPYVMQ Trigger: CTGCATAACATATGGAAATTGAAAGCAGCACTCCTCTGGGTATCAGGACCTCTGAATCCTATAAAACCTAAAGGTGCAGGGACAAGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS GCA 72 bp | TGGCTTAGACTGACACAAGAGCAGGGGCAGGATCCCTaGAACCAGGATACTGGGAAGCGATGGGAGGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: WLRLTQEQGQDP*NQDTGKRWEGW Trigger: CCACCCCTCCCATCGCTTCCCAGTATCCTGGTTGCAGGGATCCTGCCCCTGCTCTTGTGTCAGTCTAAGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CCA 72 bp | CCTGCATGCACAGACAGATCCTGTAAAGCACAGCAGTaGGGCGGCATACAGAGCTGTCCGGCACATGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: PACTDRSCKAQQ*GGIQSCPAHGH Trigger: ATGGCCATGTGCCGGACAGCTCTGTATGCCGCCCCACTGCTGTGCTTTACAGGATCTGTCTGTGCATGCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CCA 72 bp | GGGCAGGATCCCTGCAACCAGGATACTGGGAAGCGATaGGAGGGGTGGACGATAAAAGGAAAGCAGACAGCA | + |
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Preference number: 6 (lower is better) Translates to: GQDPCNQDTGKR*EGWTIKGKQTA Trigger: TGCTGTCTGCTTTCCTTTTATCGTCCACCCCTCCCATCGCTTCCCAGTATCCTGGTTGCAGGGATCCTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS TCA 72 bp | CGGCACATGGCCATCTTTTTGCAGGATGGCGTGAGATaGGAACAGAGAGGAACTGTAGGCAGGGAGTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: RHMAIFLQDGVR*EQRGTVGREWS Trigger: AGACCACTCCCTGCCTACAGTTCCTCTCTGTTCTCATCTCACGCCATCCTGCAAAAAGATGGCCATGTGCCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CCA 72 bp | CAGAGCTGTCCGGCACATGGCCATCTTTTTGCAGGATaGCGTGAGATGAGAACAGAGAGGAACTGTAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: QSCPAHGHLFAG*REMRTERNCRQ Trigger: CTGCCTACAGTTCCTCTCTGTTCTCATCTCACGCCATCCTGCAAAAAGATGGCCATGTGCCGGACAGCTCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CAA 72 bp | GGTGGGAACACTACCTACCTTTCCAACTGTACGGCTTaGCCCGTTCTAGGCTTCTTGAGGTCAGAGTTGATA | + |
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Preference number: 6 (lower is better) Translates to: GGNTTYLSNCTA*PVLGFLRSELI Trigger: TATCAACTCTGACCTCAAGAAGCCTAGAACGGGCAAAGCCGTACAGTTGGAAAGGTAGGTAGTGTTCCCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CCA 72 bp | ACCATGAATAAATTCTCTAGCGTGAACAGTTCTCACTaGCTTAGACTGACACAAGAGCAGGGGCAGGATCCC | + |
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Preference number: 6 (lower is better) Translates to: TMNKFSSVNSSH*LRLTQEQGQDP Trigger: GGGATCCTGCCCCTGCTCTTGTGTCAGTCTAAGCCAGTGAGAACTGTTCACGCTAGAGAATTTATTCATGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CAA 72 bp | GCAGTGGGGACAAACACCCTGAAGAGTGTCATTAAGTaGCTTGGCTTCTTTCTGCTTCAGCTTCCTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: AVGTNTLKSVIK*LGFFLLQLPHL Trigger: AAGATGAGGAAGCTGAAGCAGAAAGAAGCCAAGCAACTTAATGACACTCTTCAGGGTGTTTGTCCCCACTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CAA 90 bp | AACCCAAAAGGTGGGAACACTACCTACCTTTCCAACTGTACGGCTTaGCCCGTTCTAGGCTTCTTGAGGTCAGAGTTGATAATATCTACA | + |
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Preference number: 6 (lower is better) Translates to: NPKGGNTTYLSNCTA*PVLGFLRSELIIST Trigger: TGTAGATATTATCAACTCTGACCTCAAGAAGCCTAGAACGGGCAAAGCCGTACAGTTGGAAAGGTAGGTAGTGTTCCCACCTTTTGGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS TCA 72 bp | CCCTGCACCTTTAGGTTTTATAGGATTCAGAGGTCCTaGTACCCAGAGGAGTGCTGCTTTCAATTTCCATAT | + |
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Preference number: 6 (lower is better) Translates to: PCTFRFYRIQRS*YPEECCFQFPY Trigger: ATATGGAAATTGAAAGCAGCACTCCTCTGGGTATCAGGACCTCTGAATCCTATAAAACCTAAAGGTGCAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS GCA 72 bp | ACCCAGAGGAGTGCTGCTTTCAATTTCCATATGTTATaGAGTAAGCGGAGTCATTTAAGAAGCGAGGTACTC | + |
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Preference number: 6 (lower is better) Translates to: TQRSAAFNFHML*SKRSHLRSEVL Trigger: GAGTACCTCGCTTCTTAAATGACTCCGCTTACTGCATAACATATGGAAATTGAAAGCAGCACTCCTCTGGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS CAA 72 bp | CTTTCCAACTGTACGGCTTTGCCCGTTCTAGGCTTCTaGAGGTCAGAGTTGATAATATCTACAAACTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: LSNCTALPVLGF*RSELIISTNLG Trigger: TCCCAAGTTTGTAGATATTATCAACTCTGACCTCAAGAAGCCTAGAACGGGCAAAGCCGTACAGTTGGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS TCA 72 bp | TCATCTTTTTATTCTCATTCTGGCATGAAGGCACAGTaGAGTTTTCCAGAGGCTGCATGGTATATAATGCCA | + |
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Preference number: 6 (lower is better) Translates to: SSFYSHSGMKAQ*SFPEAAWYIMP Trigger: TGGCATTATATACCATGCAGCCTCTGGAAAACTTCACTGTGCCTTCATGCCAGAATGAGAATAAAAAGATGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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| CDS GCA 72 bp | AAACCATATGTTTTATTACAGGCACAGGAAAGGTTTTaGAGATGTATCGCCAATCTTTCCATATACTCTCAG | + |
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Preference number: 6 (lower is better) Translates to: KPYVLLQAQERF*RCIANLSIYSQ Trigger: CTGAGAGTATATGGAAAGATTGGCGATACATCTGCAAAACCTTTCCTGTGCCTGTAATAAAACATATGGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000496220.1 |
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