Pregenerated sensors for LINC01986 (Homo sapiens)
Ensembl gene IDs: ENSG00000223587Ensembl transcript IDs: ENST00000440867.1, ENST00000656877.1, ENST00000659825.1, ENST00000660204.1, ENST00000660491.1, ENST00000661675.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CAATTAAGTATATACATGCCAGTTTTTGACTATAAAACTACAAATTaGAGAAACAGATACCATGCCCGCTCCACTTCTGTTCTGGTGGTT | + |
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Preference number: 5 (lower is better) Translates to: QLSIYMPVFDYKTTN*RNRYHARSTSVLVV Trigger: AACCACCAGAACAGAAGTGGAGCGGGCATGGTATCTGTTTCTTCAATTTGTAGTTTTATAGTCAAAAACTGGCATGTATATACTTAATTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000440867.1 ENST00000656877.1 ENST00000659825.1 ENST00000660204.1 ENST00000660491.1 ENST00000661675.1 |
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| CDS CCA 72 bp | GGCAGCGAAGTGCTGAGTAGAGAAGGGCAGGATCCCTaGCAAGGGCTACAACCTCGGGCCTGTGCCCATGGA | + |
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Preference number: 6 (lower is better) Translates to: GSEVLSREGQDP*QGLQPRACAHG Trigger: TCCATGGGCACAGGCCCGAGGTTGTAGCCCTTGCCAGGGATCCTGCCCTTCTCTACTCAGCACTTCGCTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660204.1 ENST00000660491.1 |
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| CDS TCA 72 bp | CGGCCAGACACCAGCAGACACCCGCAGGCCATCGACTaGCCAAGGAACAAAGTAGACGTCGTTGTGTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: RPDTSRHPQAID*PRNKVDVVVSL Trigger: GAGAGACACAACGACGTCTACTTTGTTCCTTGGTCAGTCGATGGCCTGCGGGTGTCTGCTGGTGTCTGGCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660204.1 ENST00000660491.1 |
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| CDS TCA 72 bp | GGGCTACAACCTCGGGCCTGTGCCCATGGACCTAAATaGGGACAGGCATTTCTGTTTTTGCCCACCAAAACA | + |
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Preference number: 6 (lower is better) Translates to: GLQPRACAHGPK*GQAFLFLPTKT Trigger: TGTTTTGGTGGGCAAAAACAGAAATGCCTGTCCTCATTTAGGTCCATGGGCACAGGCCCGAGGTTGTAGCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000660204.1 ENST00000660491.1 |
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| CDS TCA 72 bp | GATGACAGCGAAGGGGTGGTGAAGAAAGTTCTTAATTaGTGTGATTCAGGAGAGGGGCAGCGAAGTGCTGAG | + |
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Preference number: 6 (lower is better) Translates to: DDSEGVVKKVLN*CDSGEGQRSAE Trigger: CTCAGCACTTCGCTGCCCCTCTCCTGAATCACATCAATTAAGAACTTTCTTCACCACCCCTTCGCTGTCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000660204.1 ENST00000660491.1 |
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| CDS CCA 72 bp | GAAACAGATACCATGCCCGCTCCACTTCTGTTCTGGTaGTTTCACATCTATCCAGTTTCTGAAGACCTCACC | + |
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Preference number: 6 (lower is better) Translates to: ETDTMPAPLLFW*FHIYPVSEDLT Trigger: GGTGAGGTCTTCAGAAACTGGATAGATGTGAAACCACCAGAACAGAAGTGGAGCGGGCATGGTATCTGTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000440867.1 ENST00000656877.1 ENST00000659825.1 ENST00000660204.1 ENST00000660491.1 ENST00000661675.1 |
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| CDS CCA 72 bp | GAAGAAACAGATACCATGCCCGCTCCACTTCTGTTCTaGTGGTTTCACATCTATCCAGTTTCTGAAGACCTC | + |
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Preference number: 6 (lower is better) Translates to: EETDTMPAPLLF*WFHIYPVSEDL Trigger: GAGGTCTTCAGAAACTGGATAGATGTGAAACCACCAGAACAGAAGTGGAGCGGGCATGGTATCTGTTTCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000440867.1 ENST00000656877.1 ENST00000659825.1 ENST00000660204.1 ENST00000660491.1 ENST00000661675.1 |
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| CDS CAA 72 bp | TTTGACTGCCTAGAAGCTTTGAATATCCTGTGTATGTaGGCTAATTTTCCAGCTTATAAGCCTGATCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: FDCLEALNILCM*ANFPAYKPDPS Trigger: GGAAGGATCAGGCTTATAAGCTGGAAAATTAGCCAACATACACAGGATATTCAAAGCTTCTAGGCAGTCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000440867.1 ENST00000656877.1 ENST00000659825.1 ENST00000660204.1 ENST00000660491.1 ENST00000661675.1 |
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| CDS TCA 72 bp | ATATACATGCCAGTTTTTGACTATAAAACTACAAATTaGAGAAACAGATACCATGCCCGCTCCACTTCTGTT | + |
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Preference number: 6 (lower is better) Translates to: IYMPVFDYKTTN*RNRYHARSTSV Trigger: AACAGAAGTGGAGCGGGCATGGTATCTGTTTCTTCAATTTGTAGTTTTATAGTCAAAAACTGGCATGTATAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000440867.1 ENST00000656877.1 ENST00000659825.1 ENST00000660204.1 ENST00000660491.1 ENST00000661675.1 |
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