Pregenerated sensors for LINC01971 (Homo sapiens)
Ensembl gene IDs: ENSG00000278200Ensembl transcript IDs: ENST00000617888.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCCTCCCCGCCTCGCCAGGTGGCAAGGCCTTCGCTCCTGGTCCCTaGGCGCCGCTCGCTTCCCTCCCGCGTGGGCAGGGGGCAGCCGCG | + |
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Preference number: 5 (lower is better) Translates to: GLPASPGGKAFAPGP*APLASLPRGQGAAA Trigger: CGCGGCTGCCCCCTGCCCACGCGGGAGGGAAGCGAGCGGCGCTCAGGGACCAGGAGCGAAGGCCTTGCCACCTGGCGAGGCGGGGAGGCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CCA 90 bp | CCACCTTGGCCTCCCCGCCTCGCCAGGTGGCAAGGCCTTCGCTCCTaGTCCCTGAGCGCCGCTCGCTTCCCTCCCGCGTGGGCAGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: PPWPPRLARWQGLRS*SLSAARFPPAWAGG Trigger: GCCCCCTGCCCACGCGGGAGGGAAGCGAGCGGCGCTCAGGGACCAGGAGCGAAGGCCTTGCCACCTGGCGAGGCGGGGAGGCCAAGGTGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CCA 90 bp | GCCTCTTCCTTCCACAGCCCACCTTGGCCTCCCCGCCTCGCCAGGTaGCAAGGCCTTCGCTCCTGGTCCCTGAGCGCCGCTCGCTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: ASSFHSPPWPPRLAR*QGLRSWSLSAARFP Trigger: AGGGAAGCGAGCGGCGCTCAGGGACCAGGAGCGAAGGCCTTGCCACCTGGCGAGGCGGGGAGGCCAAGGTGGGCTGTGGAAGGAAGAGGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CCA 72 bp | TCCTGGTCCCTGAGCGCCGCTCGCTTCCCTCCCGCGTaGGCAGGGGGCAGCCGCGACGCCGGCCCAGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: SWSLSAARFPPA*AGGSRDAGPAP Trigger: AGGCGCTGGGCCGGCGTCGCGGCTGCCCCCTGCCCACGCGGGAGGGAAGCGAGCGGCGCTCAGGGACCAGGA 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS TCA 72 bp | GCCTCGCCAGGTGGCAAGGCCTTCGCTCCTGGTCCCTaGGCGCCGCTCGCTTCCCTCCCGCGTGGGCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: ASPGGKAFAPGP*APLASLPRGQG Trigger: CCCCTGCCCACGCGGGAGGGAAGCGAGCGGCGCTCAGGGACCAGGAGCGAAGGCCTTGCCACCTGGCGAGGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CCA 72 bp | CCTCCCCGCCTCGCCAGGTGGCAAGGCCTTCGCTCCTaGTCCCTGAGCGCCGCTCGCTTCCCTCCCGCGTGG | + |
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Preference number: 6 (lower is better) Translates to: PPRLARWQGLRS*SLSAARFPPAW Trigger: CCACGCGGGAGGGAAGCGAGCGGCGCTCAGGGACCAGGAGCGAAGGCCTTGCCACCTGGCGAGGCGGGGAGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CAA 72 bp | CGTGGGGCCGCACGGGCTGGCGGCCCCCTCACCCGATaGGCCGCCGCACAGCCAATCAGAGAGCGGAGGCGA | + |
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Preference number: 6 (lower is better) Translates to: RGAARAGGPLTR*AAAQPIRERRR Trigger: TCGCCTCCGCTCTCTGATTGGCTGTGCGGCGGCCAATCGGGTGAGGGGGCCGCCAGCCCGTGCGGCCCCACG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CCA 72 bp | GTGGGGCCGCACGGGCTGGCGGCCCCCTCACCCGATTaGCCGCCGCACAGCCAATCAGAGAGCGGAGGCGAT | + |
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Preference number: 6 (lower is better) Translates to: VGPHGLAAPSPD*PPHSQSESGGD Trigger: ATCGCCTCCGCTCTCTGATTGGCTGTGCGGCGGCCAATCGGGTGAGGGGGCCGCCAGCCCGTGCGGCCCCAC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CAA 72 bp | CAGCGGCAGGCCCGCCTCTTCCTTCCACAGCCCACCTaGGCCTCCCCGCCTCGCCAGGTGGCAAGGCCTTCG | + |
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Preference number: 6 (lower is better) Translates to: QRQARLFLPQPT*ASPPRQVARPS Trigger: CGAAGGCCTTGCCACCTGGCGAGGCGGGGAGGCCAAGGTGGGCTGTGGAAGGAAGAGGCGGGCCTGCCGCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CAA 90 bp | CACCACCACCAGCGGCAGGCCCGCCTCTTCCTTCCACAGCCCACCTaGGCCTCCCCGCCTCGCCAGGTGGCAAGGCCTTCGCTCCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: HHHQRQARLFLPQPT*ASPPRQVARPSLLV Trigger: GACCAGGAGCGAAGGCCTTGCCACCTGGCGAGGCGGGGAGGCCAAGGTGGGCTGTGGAAGGAAGAGGCGGGCCTGCCGCTGGTGGTGGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CAA 72 bp | GCTGCCCTCCAGGTCTCAGGGGGTAACAGCTCCCCTTaGTTGCTGGCCCTGGGTACTGCACAGCTCTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: AALQVSGGNSSP*LLALGTAQLSF Trigger: AAAGGAGAGCTGTGCAGTACCCAGGGCCAGCAACAAAGGGGAGCTGTTACCCCCTGAGACCTGGAGGGCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS CAA 90 bp | GCTCCAGCTGCCCTCCAGGTCTCAGGGGGTAACAGCTCCCCTTTGTaGCTGGCCCTGGGTACTGCACAGCTCTCCTTTAATTCACGTATT | + |
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Preference number: 6 (lower is better) Translates to: APAALQVSGGNSSPL*LALGTAQLSFNSRI Trigger: AATACGTGAATTAAAGGAGAGCTGTGCAGTACCCAGGGCCAGCAACAAAGGGGAGCTGTTACCCCCTGAGACCTGGAGGGCAGCTGGAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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| CDS GCA 72 bp | CCCTCCAGGTCTCAGGGGGTAACAGCTCCCCTTTGTTaGTGGCCCTGGGTACTGCACAGCTCTCCTTTAATT | + |
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Preference number: 6 (lower is better) Translates to: PSRSQGVTAPLC*WPWVLHSSPLI Trigger: AATTAAAGGAGAGCTGTGCAGTACCCAGGGCCAGCAACAAAGGGGAGCTGTTACCCCCTGAGACCTGGAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000617888.1 |
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