Pregenerated sensors for LINC01943 (Homo sapiens)
Ensembl gene IDs: ENSG00000280721Ensembl transcript IDs: ENST00000625410.1, ENST00000629820.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CACTGCTCATCCCTGCTAACTCAGGCTCCTTCGACCTCTTCACCCTaGCTCTCCCCAGTGGTGGCCACCCCCAGCTGCAAGGGCGATAAC | + |
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Preference number: 5 (lower is better) Translates to: HCSSLLTQAPSTSSP*LSPVVATPSCKGDN Trigger: GTTATCGCCCTTGCAGCTGGGGGTGGCCACCACTGGGGAGAGGCAGGGTGAAGAGGTCGAAGGAGCCTGAGTTAGCAGGGATGAGCAGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000625410.1 |
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| CDS CCA 90 bp | GTTTCACATAAAAGAAATCCAGAGGATAATGGGTCTGGGGTTACCTaGCCACTGCTCATCCCTGCTAACTCAGGCTCCTTCGACCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: VSHKRNPEDNGSGVT*PLLIPANSGSFDLF Trigger: GAAGAGGTCGAAGGAGCCTGAGTTAGCAGGGATGAGCAGTGGCCAGGTAACCCCAGACCCATTATCCTCTGGATTTCTTTTATGTGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000625410.1 |
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| CDS GCA 72 bp | TCCCTGCTAACTCAGGCTCCTTCGACCTCTTCACCCTaGCTCTCCCCAGTGGTGGCCACCCCCAGCTGCAAG | + |
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Preference number: 6 (lower is better) Translates to: SLLTQAPSTSSP*LSPVVATPSCK Trigger: CTTGCAGCTGGGGGTGGCCACCACTGGGGAGAGGCAGGGTGAAGAGGTCGAAGGAGCCTGAGTTAGCAGGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000625410.1 |
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| CDS GCA 72 bp | TCACCCTGCCTCTCCCCAGTGGTGGCCACCCCCAGCTaGAAGGGCGATAACACACGTGGAGTTGTTCTAGGA | + |
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Preference number: 6 (lower is better) Translates to: SPCLSPVVATPS*KGDNTRGVVLG Trigger: TCCTAGAACAACTCCACGTGTGTTATCGCCCTTGCAGCTGGGGGTGGCCACCACTGGGGAGAGGCAGGGTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000625410.1 |
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| CDS CAA 90 bp | TGGCCTTTCTCGACCCAGAAGCTTGTTCCTTTGTGTCTTGGGGTCTaGGCGACAGCTGCTCTCTTGTCCTGGAATGCTGCTGACTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: WPFSTQKLVPLCLGV*ATAALLSWNAADWL Trigger: GAGCCAGTCAGCAGCATTCCAGGACAAGAGAGCAGCTGTCGCCAAGACCCCAAGACACAAAGGAACAAGCTTCTGGGTCGAGAAAGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629820.1 |
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| CDS GCA 72 bp | ATCCAGAGGATAATGGGTCTGGGGTTACCTGGCCACTaGTCATCCCTGCTAACTCAGGCTCCTTCGACCTCT | + |
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Preference number: 6 (lower is better) Translates to: IQRIMGLGLPGH*SSLLTQAPSTS Trigger: AGAGGTCGAAGGAGCCTGAGTTAGCAGGGATGAGCAGTGGCCAGGTAACCCCAGACCCATTATCCTCTGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000625410.1 |
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| CDS CCA 72 bp | AGCATGTCGAATGTTCTGAGGCCTCCAGGGGGTGCATaGCAGTCTCTCAGTAGTGTGCAACTTGGCCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SMSNVLRPPGGA*QSLSSVQLGLS Trigger: AGAAAGGCCAAGTTGCACACTACTGAGAGACTGCCATGCACCCCCTGGAGGCCTCAGAACATTCGACATGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000625410.1 |
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| CDS CCA 72 bp | GCCTTTCTCGACCCAGAAGCTTGTTCCTTTGTGTCTTaGGGTCTTGGCGACAGCTGCTCTCTTGTCCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: AFLDPEACSFVS*GLGDSCSLVLE Trigger: TTCCAGGACAAGAGAGCAGCTGTCGCCAAGACCCCAAGACACAAAGGAACAAGCTTCTGGGTCGAGAAAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000629820.1 |
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| CDS CAA 72 bp | TCGACCCAGAAGCTTGTTCCTTTGTGTCTTGGGGTCTaGGCGACAGCTGCTCTCTTGTCCTGGAATGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: STQKLVPLCLGV*ATAALLSWNAA Trigger: AGCAGCATTCCAGGACAAGAGAGCAGCTGTCGCCAAGACCCCAAGACACAAAGGAACAAGCTTCTGGGTCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629820.1 |
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| CDS CAA 90 bp | CAGTCTCTCAGTAGTGTGCAACTTGGCCTTTCTCGACCCAGAAGCTaGTTCCTTTGTGTCTTGGGGTCTTGGCGACAGCTGCTCTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: QSLSSVQLGLSRPRS*FLCVLGSWRQLLSC Trigger: ACAAGAGAGCAGCTGTCGCCAAGACCCCAAGACACAAAGGAACAAGCTTCTGGGTCGAGAAAGGCCAAGTTGCACACTACTGAGAGACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000629820.1 |
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| CDS CAA 90 bp | TGCAAGGGCGATAACACACGTGGAGTTGTTCTAGGAAGAATTATTTaGTGCCCAGCTGAAAATCAGGGGCTTGATTATCAGGGAAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: CKGDNTRGVVLGRII*CPAENQGLDYQGRG Trigger: CCCCCTTCCCTGATAATCAAGCCCCTGATTTTCAGCTGGGCACAAAATAATTCTTCCTAGAACAACTCCACGTGTGTTATCGCCCTTGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000625410.1 |
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