Pregenerated sensors for LINC01893 (Homo sapiens)
Ensembl gene IDs: ENSG00000264260Ensembl transcript IDs: ENST00000581750.2, ENST00000657495.1, ENST00000657827.1, ENST00000658613.1, ENST00000661638.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTGACGCTTCTCCAGATGACAGTTCTTGTGCCAGCGTCTCAGGTCTaGTCCAGGCTGACGGGTGCTCCGTGCACACAGCAGACCCTGCCG | + |
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Preference number: 5 (lower is better) Translates to: VTLLQMTVLVPASQV*SRLTGAPCTQQTLP Trigger: CGGCAGGGTCTGCTGTGTGCACGGAGCACCCGTCAGCCTGGAGCAGACCTGAGACGCTGGCACAAGAACTGTCATCTGGAGAAGCGTCAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661638.1 |
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| CDS GCA 90 bp | CTTGTGCCAGCGTCTCAGGTCTGCTCCAGGCTGACGGGTGCTCCGTaGACACAGCAGACCCTGCCGGAAGCTGTGTTTCAAACAAGACAT | + |
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Preference number: 5 (lower is better) Translates to: LVPASQVCSRLTGAP*TQQTLPEAVFQTRH Trigger: ATGTCTTGTTTGAAACACAGCTTCCGGCAGGGTCTGCTGTGTGCACGGAGCACCCGTCAGCCTGGAGCAGACCTGAGACGCTGGCACAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661638.1 |
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| CDS CCA 90 bp | CCTTGTGAGCGAATTCTCCAGCCAGGAGCTCACACTCTCCTTCCTTaGTTTGCATGTGGATGGCTCAACATCCAGGTGATCCGATCCATC | + |
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Preference number: 5 (lower is better) Translates to: PCERILQPGAHTLLP*FACGWLNIQVIRSI Trigger: GATGGATCGGATCACCTGGATGTTGAGCCATCCACATGCAAACCAAGGAAGGAGAGTGTGAGCTCCTGGCTGGAGAATTCGCTCACAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000581750.2 ENST00000661638.1 |
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| CDS CCA 90 bp | AATTCTCCAGCCAGGAGCTCACACTCTCCTTCCTTGGTTTGCATGTaGATGGCTCAACATCCAGGTGATCCGATCCATCGGTTGATCTCT | + |
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Preference number: 5 (lower is better) Translates to: NSPARSSHSPSLVCM*MAQHPGDPIHRLIS Trigger: AGAGATCAACCGATGGATCGGATCACCTGGATGTTGAGCCATCCACATGCAAACCAAGGAAGGAGAGTGTGAGCTCCTGGCTGGAGAATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000581750.2 ENST00000661638.1 |
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| CDS GCA 90 bp | TCTCTCTTTTTCATAGAGGTCATCGTGCCACAAAGCGTTCATTGTTaGCATCATGTGTGTCACCAAAAACTGTTACTTCTCCAGAAGAAT | + |
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Preference number: 5 (lower is better) Translates to: SLFFIEVIVPQSVHC*HHVCHQKLLLLQKN Trigger: ATTCTTCTGGAGAAGTAACAGTTTTTGGTGACACACATGATGGCAACAATGAACGCTTTGTGGCACGATGACCTCTATGAAAAAGAGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000581750.2 ENST00000658613.1 ENST00000661638.1 |
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| CDS GCA 90 bp | TCTCTCTTTTTCATAGAGGTCATCGTGCCACAAAGCGTTCATTGTTaGCATCATGTGTGTCACCAAAAACTGTTACTCTTATCTTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: SLFFIEVIVPQSVHC*HHVCHQKLLLLSSS Trigger: ACTGGAAGATAAGAGTAACAGTTTTTGGTGACACACATGATGGCAACAATGAACGCTTTGTGGCACGATGACCTCTATGAAAAAGAGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000657495.1 |
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| CDS TCA 90 bp | AGGGATGATAGCATGTTCTCTATCTGGATTCTGGTGGTAGTTCCATaGCAATCTGCATTTATCAAAGTTGATAATTGTAAAATGATGCCT | + |
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Preference number: 5 (lower is better) Translates to: RDDSMFSIWILVVVP*QSAFIKVDNCKMMP Trigger: AGGCATCATTTTACAATTATCAACTTTGATAAATGCAGATTGTCATGGAACTACCACCAGAATCCAGATAGAGAACATGCTATCATCCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000581750.2 ENST00000657495.1 ENST00000658613.1 |
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| CDS GCA 72 bp | GCGTCTCAGGTCTGCTCCAGGCTGACGGGTGCTCCGTaGACACAGCAGACCCTGCCGGAAGCTGTGTTTCAA | + |
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Preference number: 6 (lower is better) Translates to: ASQVCSRLTGAP*TQQTLPEAVFQ Trigger: TTGAAACACAGCTTCCGGCAGGGTCTGCTGTGTGCACGGAGCACCCGTCAGCCTGGAGCAGACCTGAGACGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661638.1 |
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| CDS GCA 72 bp | CTCCAGATGACAGTTCTTGTGCCAGCGTCTCAGGTCTaGTCCAGGCTGACGGGTGCTCCGTGCACACAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LQMTVLVPASQV*SRLTGAPCTQQ Trigger: CTGCTGTGTGCACGGAGCACCCGTCAGCCTGGAGCAGACCTGAGACGCTGGCACAAGAACTGTCATCTGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661638.1 |
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| CDS CCA 72 bp | GCCAGGAGCTCACACTCTCCTTCCTTGGTTTGCATGTaGATGGCTCAACATCCAGGTGATCCGATCCATCGG | + |
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Preference number: 6 (lower is better) Translates to: ARSSHSPSLVCM*MAQHPGDPIHR Trigger: CCGATGGATCGGATCACCTGGATGTTGAGCCATCCACATGCAAACCAAGGAAGGAGAGTGTGAGCTCCTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000581750.2 ENST00000661638.1 |
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| CDS GCA 72 bp | TCTCCAGCCAGGAGCTCACACTCTCCTTCCTTGGTTTaGATGTGGATGGCTCAACATCCAGGTGATCCGATC | + |
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Preference number: 6 (lower is better) Translates to: SPARSSHSPSLV*MWMAQHPGDPI Trigger: GATCGGATCACCTGGATGTTGAGCCATCCACATGCAAACCAAGGAAGGAGAGTGTGAGCTCCTGGCTGGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000581750.2 ENST00000661638.1 |
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| CDS CCA 72 bp | CGAATTCTCCAGCCAGGAGCTCACACTCTCCTTCCTTaGTTTGCATGTGGATGGCTCAACATCCAGGTGATC | + |
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Preference number: 6 (lower is better) Translates to: RILQPGAHTLLP*FACGWLNIQVI Trigger: GATCACCTGGATGTTGAGCCATCCACATGCAAACCAAGGAAGGAGAGTGTGAGCTCCTGGCTGGAGAATTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000581750.2 ENST00000657827.1 ENST00000661638.1 |
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| CDS CAA 72 bp | GCGAATTCTCCAGCCAGGAGCTCACACTCTCCTTCCTaGGTTTGCATGTGGATGGCTCAACATCCAGGTGAT | + |
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Preference number: 6 (lower is better) Translates to: ANSPARSSHSPS*VCMWMAQHPGD Trigger: ATCACCTGGATGTTGAGCCATCCACATGCAAACCAAGGAAGGAGAGTGTGAGCTCCTGGCTGGAGAATTCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000581750.2 ENST00000657827.1 ENST00000661638.1 |
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| CDS CAA 72 bp | GTGGTGCATGTACTGCATCCTAAATCATGCTTCCAGTaGAGTCAGAGGCAGCGTTCTGGTCGCACACACGCA | + |
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Preference number: 6 (lower is better) Translates to: VVHVLHPKSCFQ*SQRQRSGRTHA Trigger: TGCGTGTGTGCGACCAGAACGCTGCCTCTGACTCAACTGGAAGCATGATTTAGGATGCAGTACATGCACCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657827.1 |
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| CDS CAA 90 bp | AAAAATGATGTGGTGCATGTACTGCATCCTAAATCATGCTTCCAGTaGAGTCAGAGGCAGCGTTCTGGTCGCACACACGCATATAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: KNDVVHVLHPKSCFQ*SQRQRSGRTHAYSC Trigger: GCAACTATATGCGTGTGTGCGACCAGAACGCTGCCTCTGACTCAACTGGAAGCATGATTTAGGATGCAGTACATGCACCACATCATTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657827.1 |
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| CDS GCA 72 bp | TGTGTGTCACCAAAAACTGTTACTTCTCCAGAAGAATaGTTTTTGTGGGCAGGGTTTCCTTGGGTGGTTACT | + |
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Preference number: 6 (lower is better) Translates to: CVSPKTVTSPEE*FLWAGFPWVVT Trigger: AGTAACCACCCAAGGAAACCCTGCCCACAAAAAGCATTCTTCTGGAGAAGTAACAGTTTTTGGTGACACACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000581750.2 ENST00000658613.1 ENST00000661638.1 |
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| CDS CAA 90 bp | AACTGTTACTTCTCCAGAAGAATGCTTTTTGTGGGCAGGGTTTCCTaGGGTGGTTACTGTAATGATGAATCAGACAATAGTCACCACCAG | + |
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Preference number: 6 (lower is better) Translates to: NCYFSRRMLFVGRVS*GGYCNDESDNSHHQ Trigger: CTGGTGGTGACTATTGTCTGATTCATCATTACAGTAACCACCCAAGGAAACCCTGCCCACAAAAAGCATTCTTCTGGAGAAGTAACAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000581750.2 ENST00000658613.1 ENST00000661638.1 |
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| CDS CAA 90 bp | TTTGTTATCTTCTCCAGAAGAATGCTTTTTGTGGGCAGGGTTTCCTaGGGTGGTTACTGTAATGATGAATCAGACAATAGTCACCACCAG | + |
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Preference number: 6 (lower is better) Translates to: FVIFSRRMLFVGRVS*GGYCNDESDNSHHQ Trigger: CTGGTGGTGACTATTGTCTGATTCATCATTACAGTAACCACCCAAGGAAACCCTGCCCACAAAAAGCATTCTTCTGGAGAAGATAACAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657495.1 |
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| CDS GCA 72 bp | TTCATAGAGGTCATCGTGCCACAAAGCGTTCATTGTTaGCATCATGTGTGTCACCAAAAACTGTTACTCTTA | + |
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Preference number: 6 (lower is better) Translates to: FIEVIVPQSVHC*HHVCHQKLLLL Trigger: TAAGAGTAACAGTTTTTGGTGACACACATGATGGCAACAATGAACGCTTTGTGGCACGATGACCTCTATGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657495.1 |
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| CDS CAA 90 bp | ATCTCTCTTTTTCATAGAGGTCATCGTGCCACAAAGCGTTCATTGTaGCCATCATGTGTGTCACCAAAAACTGTTACTTCTCCAGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: ISLFHRGHRATKRSL*PSCVSPKTVTSPEE Trigger: TTCTTCTGGAGAAGTAACAGTTTTTGGTGACACACATGATGGCAACAATGAACGCTTTGTGGCACGATGACCTCTATGAAAAAGAGAGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000581750.2 ENST00000658613.1 ENST00000661638.1 |
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| CDS CAA 90 bp | ATCTCTCTTTTTCATAGAGGTCATCGTGCCACAAAGCGTTCATTGTaGCCATCATGTGTGTCACCAAAAACTGTTACTCTTATCTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: ISLFHRGHRATKRSL*PSCVSPKTVTLIFQ Trigger: CTGGAAGATAAGAGTAACAGTTTTTGGTGACACACATGATGGCAACAATGAACGCTTTGTGGCACGATGACCTCTATGAAAAAGAGAGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000657495.1 |
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| CDS CAA 90 bp | AATAAAAACTTCTCCAGAAGAATGCTTTTTGTGGGCAGGGTTTCCTaGGGTGGTTACTGTAATGATGAATCAGACAATAGTCACCACCAG | + |
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Preference number: 6 (lower is better) Translates to: NKNFSRRMLFVGRVS*GGYCNDESDNSHHQ Trigger: CTGGTGGTGACTATTGTCTGATTCATCATTACAGTAACCACCCAAGGAAACCCTGCCCACAAAAAGCATTCTTCTGGAGAAGTTTTTATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000657827.1 |
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| CDS CAA 90 bp | TATATCTCTCTTTTTCATAGAGGTCATCGTGCCACAAAGCGTTCATaGTTGCCATCATGTGTGTCACCAAAAACTGTTACTTCTCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: YISLFHRGHRATKRS*LPSCVSPKTVTSPE Trigger: TTCTGGAGAAGTAACAGTTTTTGGTGACACACATGATGGCAACAATGAACGCTTTGTGGCACGATGACCTCTATGAAAAAGAGAGATATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000581750.2 ENST00000658613.1 ENST00000661638.1 |
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| CDS CAA 90 bp | TATATCTCTCTTTTTCATAGAGGTCATCGTGCCACAAAGCGTTCATaGTTGCCATCATGTGTGTCACCAAAAACTGTTACTCTTATCTTC | + |
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Preference number: 6 (lower is better) Translates to: YISLFHRGHRATKRS*LPSCVSPKTVTLIF Trigger: GAAGATAAGAGTAACAGTTTTTGGTGACACACATGATGGCAACAATGAACGCTTTGTGGCACGATGACCTCTATGAAAAAGAGAGATATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000657495.1 |
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| CDS TCA 72 bp | AGCATGTTCTCTATCTGGATTCTGGTGGTAGTTCCATaGCAATCTGCATTTATCAAAGTTGATAATTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: SMFSIWILVVVP*QSAFIKVDNCK Trigger: TTTACAATTATCAACTTTGATAAATGCAGATTGTCATGGAACTACCACCAGAATCCAGATAGAGAACATGCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000581750.2 ENST00000657495.1 ENST00000658613.1 |
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