Pregenerated sensors for LINC01878 (Homo sapiens)
Ensembl gene IDs: ENSG00000234308Ensembl transcript IDs: ENST00000434559.1, ENST00000453965.2, ENST00000653871.1, ENST00000656101.1, ENST00000659055.1, ENST00000662471.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCTTTTTGCTCGGCAGCTCTGTCTTGTTCTTTCATGGTTGCTGGATaGGTCCATTTGCCAGGTATTCCATGTAGACACAGCTATATCCAG | + |
|
Preference number: 5 (lower is better) Translates to: PFCSAALSCSFMVAG*VHLPGIPCRHSYIQ Trigger: CTGGATATAGCTGTGTCTACATGGAATACCTGGCAAATGGACTCATCCAGCAACCATGAAAGAACAAGACAGAGCTGCCGAGCAAAAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434559.1 ENST00000653871.1 ENST00000659055.1 ENST00000662471.1 |
||
| CDS TCA 90 bp | GAGATGGGAATCCTTCAAAGCTCATCATCATCAAAAGGCTCAGGTTaGATCTATAGCCATCCATGGCACTATGCTATGTTAGTAGTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: EMGILQSSSSSKGSG*IYSHPWHYAMLVVC Trigger: GCACACTACTAACATAGCATAGTGCCATGGATGGCTATAGATTCAACCTGAGCCTTTTGATGATGATGAGCTTTGAAGGATTCCCATCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653871.1 |
||
| CDS GCA 90 bp | AGAATTGGGGTTATATTAACCAGGAAGAAGAAGGTGGGAAATGGCTaGGACGTAGGCAGTTATAAGTGTATAATACCATACCTAAGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: RIGVILTRKKKVGNG*DVGSYKCIIPYLRR Trigger: TCTTCTTAGGTATGGTATTATACACTTATAACTGCCTACGTCGCAGCCATTTCCCACCTTCTTCTTCCTGGTTAATATAACCCCAATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659055.1 |
||
| CDS CAA 72 bp | GGGAAACCAGGCCAAGAAGGAGAGAGAGCCAATGACTaGCCAGTAGATGGTGGTTATAAGTGCCACTTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: GKPGQEGERAND*PVDGGYKCHFP Trigger: GGGAAAGTGGCACTTATAACCACCATCTACTGGCAAGTCATTGGCTCTCTCTCCTTCTTGGCCTGGTTTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656101.1 |
||
| CDS CAA 72 bp | CCTGGGCTCTCCAGGAAGCAGAACCTGAGTGCAAGCTaGTTATCGGCTTTTGTGATCCTGGAAAAAGGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: PGLSRKQNLSAS*LSAFVILEKGR Trigger: CCTACCTTTTTCCAGGATCACAAAAGCCGATAACAAGCTTGCACTCAGGTTCTGCTTCCTGGAGAGCCCAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656101.1 |
||
| CDS CAA 72 bp | ACCCAGGTTCTCTCCTTTTTGCTCGGCAGCTCTGTCTaGTTCTTTCATGGTTGCTGGATGAGTCCATTTGCC | + |
|
Preference number: 6 (lower is better) Translates to: TQVLSFLLGSSV*FFHGCWMSPFA Trigger: GGCAAATGGACTCATCCAGCAACCATGAAAGAACAAGACAGAGCTGCCGAGCAAAAAGGAGAGAACCTGGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434559.1 ENST00000653871.1 ENST00000659055.1 ENST00000662471.1 |
||
| CDS CAA 90 bp | ATTCCATGCACCCAGGTTCTCTCCTTTTTGCTCGGCAGCTCTGTCTaGTTCTTTCATGGTTGCTGGATGAGTCCATTTGCCAGGTATTCC | + |
|
Preference number: 6 (lower is better) Translates to: IPCTQVLSFLLGSSV*FFHGCWMSPFARYS Trigger: GGAATACCTGGCAAATGGACTCATCCAGCAACCATGAAAGAACAAGACAGAGCTGCCGAGCAAAAAGGAGAGAACCTGGGTGCATGGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434559.1 ENST00000653871.1 ENST00000659055.1 ENST00000662471.1 |
||
| CDS CAA 90 bp | AGATATCAGCCTGGGCTCTCCAGGAAGCAGAACCTGAGTGCAAGCTaGTTATCGGCTTTTGTGATCCTGGAAAAAGGTAGGAATGAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: RYQPGLSRKQNLSAS*LSAFVILEKGRNEG Trigger: TCCCTCATTCCTACCTTTTTCCAGGATCACAAAAGCCGATAACAAGCTTGCACTCAGGTTCTGCTTCCTGGAGAGCCCAGGCTGATATCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656101.1 |
||
| CDS TCA 72 bp | TCGGCAGCTCTGTCTTGTTCTTTCATGGTTGCTGGATaGGTCCATTTGCCAGGTATTCCATGTAGACACAGC | + |
|
Preference number: 6 (lower is better) Translates to: SAALSCSFMVAG*VHLPGIPCRHS Trigger: GCTGTGTCTACATGGAATACCTGGCAAATGGACTCATCCAGCAACCATGAAAGAACAAGACAGAGCTGCCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000434559.1 ENST00000653871.1 ENST00000659055.1 ENST00000662471.1 |
||
| CDS CAA 72 bp | CTTTTTGCTCGGCAGCTCTGTCTTGTTCTTTCATGGTaGCTGGATGAGTCCATTTGCCAGGTATTCCATGTA | + |
|
Preference number: 6 (lower is better) Translates to: LFARQLCLVLSW*LDESICQVFHV Trigger: TACATGGAATACCTGGCAAATGGACTCATCCAGCAACCATGAAAGAACAAGACAGAGCTGCCGAGCAAAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434559.1 ENST00000653871.1 ENST00000659055.1 ENST00000662471.1 |
||
| CDS GCA 72 bp | AGAGCCAATGACTTGCCAGTAGATGGTGGTTATAAGTaGCACTTTCCCAATCACGAAGAGATTGAGAACTGT | + |
|
Preference number: 6 (lower is better) Translates to: RANDLPVDGGYK*HFPNHEEIENC Trigger: ACAGTTCTCAATCTCTTCGTGATTGGGAAAGTGGCACTTATAACCACCATCTACTGGCAAGTCATTGGCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656101.1 |
||
| CDS TCA 72 bp | ATCCTTCAAAGCTCATCATCATCAAAAGGCTCAGGTTaGATCTATAGCCATCCATGGCACTATGCTATGTTA | + |
|
Preference number: 6 (lower is better) Translates to: ILQSSSSSKGSG*IYSHPWHYAML Trigger: TAACATAGCATAGTGCCATGGATGGCTATAGATTCAACCTGAGCCTTTTGATGATGATGAGCTTTGAAGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653871.1 |
||
| CDS GCA 72 bp | AATTCTTTTCTTGACTGCCCCTATCAATATCCTGGCTaGTCATACCCGCATTTCTACTTAGAATCCAGATTT | + |
|
Preference number: 6 (lower is better) Translates to: NSFLDCPYQYPG*SYPHFYLESRF Trigger: AAATCTGGATTCTAAGTAGAAATGCGGGTATGAGCAGCCAGGATATTGATAGGGGCAGTCAAGAAAAGAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656101.1 |
||
| CDS GCA 72 bp | GTTATATTAACCAGGAAGAAGAAGGTGGGAAATGGCTaGGACGTAGGCAGTTATAAGTGTATAATACCATAC | + |
|
Preference number: 6 (lower is better) Translates to: VILTRKKKVGNG*DVGSYKCIIPY Trigger: GTATGGTATTATACACTTATAACTGCCTACGTCGCAGCCATTTCCCACCTTCTTCTTCCTGGTTAATATAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659055.1 |
||
| CDS CAA 72 bp | CCAGAACCAATTACTTATTTCAGTAGAATTCTTTTCTaGACTGCCCCTATCAATATCCTGGCTGCTCATACC | + |
|
Preference number: 6 (lower is better) Translates to: PEPITYFSRILF*TAPINILAAHT Trigger: GGTATGAGCAGCCAGGATATTGATAGGGGCAGTCAAGAAAAGAATTCTACTGAAATAAGTAATTGGTTCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000434559.1 ENST00000653871.1 |
||
| CDS CAA 72 bp | TCAGAAATCCTGAACCTGCTTCCCACATCAGATAATTaGCTAGCTGTCCATGGGAATTCATCATCCTTATTT | + |
|
Preference number: 6 (lower is better) Translates to: SEILNLLPTSDN*LAVHGNSSSLF Trigger: AAATAAGGATGATGAATTCCCATGGACAGCTAGCAAATTATCTGATGTGGGAAGCAGGTTCAGGATTTCTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000453965.2 ENST00000656101.1 |
||
| CDS CAA 90 bp | GGAAATCTTTCTTCCAGGACTTCAGACTGCCATCAGATAAGAATTTaGAAACATCCTTTTCCAGAACCAATTACTGTCCAGGGAAATAGA | + |
|
Preference number: 6 (lower is better) Translates to: GNLSSRTSDCHQIRI*KHPFPEPITVQGNR Trigger: TCTATTTCCCTGGACAGTAATTGGTTCTGGAAAAGGATGTTTCAAAATTCTTATCTGATGGCAGTCTGAAGTCCTGGAAGAAAGATTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659055.1 |
||
| CDS CAA 72 bp | CCAACTAGCTGTGTGACTCTGTACAAGTCAGTTATCTaGTTAGACTCTCCCGTTTCTTTATTTATGAGACAA | + |
|
Preference number: 6 (lower is better) Translates to: PTSCVTLYKSVI*LDSPVSLFMRQ Trigger: TTGTCTCATAAATAAAGAAACGGGAGAGTCTAACAAGATAACTGACTTGTACAGAGTCACACAGCTAGTTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656101.1 |
||
| CDS CCA 72 bp | CTTAAAGTATATTGTCACTGGAGATCTGAACAGAATTaGGGTTATATTAACCAGGAAGAAGAAGGTGGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: LKVYCHWRSEQN*GYINQEEEGGK Trigger: TTTCCCACCTTCTTCTTCCTGGTTAATATAACCCCAATTCTGTTCAGATCTCCAGTGACAATATACTTTAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659055.1 |
||
| CDS TCA 72 bp | AAAGTTACAGACATAATGAATAATGGAGAAGGGGCTTaGTGTCAGCTACATCTTTTGATTCCAAGTTTAATG | + |
|
Preference number: 6 (lower is better) Translates to: KVTDIMNNGEGA*CQLHLLIPSLM Trigger: CATTAAACTTGGAATCAAAAGATGTAGCTGACATCAAGCCCCTTCTCCATTATTCATTATGTCTGTAACTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653871.1 |
||