Pregenerated sensors for LINC01846 (Homo sapiens)
Ensembl gene IDs: ENSG00000248901Ensembl transcript IDs: ENST00000505908.2, ENST00000671389.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGTAGTCACCAACACTTCCTGTTGTGCCTTCCTGGGCACTTTAGCTaGTATCCTACTTCTCTTGATCTTTGGGCCCCGTTTCTTAAACTG | + |
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Preference number: 5 (lower is better) Translates to: CSHQHFLLCLPGHFS*YPTSLDLWAPFLKL Trigger: CAGTTTAAGAAACGGGGCCCAAAGATCAAGAGAAGTAGGATATCAGCTAAAGTGCCCAGGAAGGCACAACAGGAAGTGTTGGTGACTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505908.2 |
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| CDS CCA 90 bp | TTCAGTAAAATATGGGTGACGTTGACGAATAGTTCATTCTCCCTATaGAGCTGTCCACAGAGGCTAAAAATAGCTTGGGCCCGCGTATAC | + |
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Preference number: 5 (lower is better) Translates to: FSKIWVTLTNSSFSL*SCPQRLKIAWARVY Trigger: GTATACGCGGGCCCAAGCTATTTTTAGCCTCTGTGGACAGCTCCATAGGGAGAATGAACTATTCGTCAACGTCACCCATATTTTACTGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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| CDS CCA 90 bp | AGATACAGCAGCACACATGTGAGGAAACGTAGTAGTCAGTCACATTaGAATACCTTCAAAATCTTCAGTAAAATATGGGTGACGTTGACG | + |
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Preference number: 5 (lower is better) Translates to: RYSSTHVRKRSSQSH*NTFKIFSKIWVTLT Trigger: CGTCAACGTCACCCATATTTTACTGAAGATTTTGAAGGTATTCCAATGTGACTGACTACTACGTTTCCTCACATGTGTGCTGCTGTATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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| CDS CCA 72 bp | ATATGGGTGACGTTGACGAATAGTTCATTCTCCCTATaGAGCTGTCCACAGAGGCTAAAAATAGCTTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: IWVTLTNSSFSL*SCPQRLKIAWA Trigger: GGCCCAAGCTATTTTTAGCCTCTGTGGACAGCTCCATAGGGAGAATGAACTATTCGTCAACGTCACCCATAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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| CDS CCA 72 bp | ACAGCTCAGCAGCATATTCTTCCCTGGAATGGGATCTaGGTGGCACAGTTTTATGTCTACCACAATAGGATC | + |
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Preference number: 6 (lower is better) Translates to: TAQQHILPWNGI*VAQFYVYHNRI Trigger: GATCCTATTGTGGTAGACATAAAACTGTGCCACCCAGATCCCATTCCAGGGAAGAATATGCTGCTGAGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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| CDS CAA 72 bp | GCCTTCCTGGGCACTTTAGCTGATATCCTACTTCTCTaGATCTTTGGGCCCCGTTTCTTAAACTGCCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: AFLGTLADILLL*IFGPRFLNCLV Trigger: AACAAGGCAGTTTAAGAAACGGGGCCCAAAGATCAAGAGAAGTAGGATATCAGCTAAAGTGCCCAGGAAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505908.2 |
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| CDS CAA 90 bp | TCCTGTTGTGCCTTCCTGGGCACTTTAGCTGATATCCTACTTCTCTaGATCTTTGGGCCCCGTTTCTTAAACTGCCTTGTTTCTTTTGTG | + |
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Preference number: 6 (lower is better) Translates to: SCCAFLGTLADILLL*IFGPRFLNCLVSFV Trigger: CACAAAAGAAACAAGGCAGTTTAAGAAACGGGGCCCAAAGATCAAGAGAAGTAGGATATCAGCTAAAGTGCCCAGGAAGGCACAACAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000505908.2 |
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| CDS CAA 90 bp | CTCACTCAGTGGTTGAATGTAGACTGCTATAGGAAGGGCATGACTTaGAATGGACCATTTCTGCAAAGGAGGCAAACCTTGAAGTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LTQWLNVDCYRKGMT*NGPFLQRRQTLKLL Trigger: CAGCAACTTCAAGGTTTGCCTCCTTTGCAGAAATGGTCCATTCAAAGTCATGCCCTTCCTATAGCAGTCTACATTCAACCACTGAGTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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| CDS CAA 90 bp | GCTTGCAGGTATTCAGGTATTCTAAGCTTTGCTCTTGGAGTCACCTaGTTTCATCCAGAGTCTACCCTAGCCAATATCGTGCGTTATAAC | + |
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Preference number: 6 (lower is better) Translates to: ACRYSGILSFALGVT*FHPESTLANIVRYN Trigger: GTTATAACGCACGATATTGGCTAGGGTAGACTCTGGATGAAACAAGGTGACTCCAAGAGCAAAGCTTAGAATACCTGAATACCTGCAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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| CDS CAA 90 bp | TCACATTGGAATACCTTCAAAATCTTCAGTAAAATATGGGTGACGTaGACGAATAGTTCATTCTCCCTATGGAGCTGTCCACAGAGGCTA | + |
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Preference number: 6 (lower is better) Translates to: SHWNTFKIFSKIWVT*TNSSFSLWSCPQRL Trigger: TAGCCTCTGTGGACAGCTCCATAGGGAGAATGAACTATTCGTCAACGTCACCCATATTTTACTGAAGATTTTGAAGGTATTCCAATGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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| CDS GCA 72 bp | TTTTATTTCTGCCTCACTCAGTGGTTGAATGTAGACTaGTATAGGAAGGGCATGACTTTGAATGGACCATTT | + |
|
Preference number: 6 (lower is better) Translates to: FYFCLTQWLNVD*YRKGMTLNGPF Trigger: AAATGGTCCATTCAAAGTCATGCCCTTCCTATAGCAGTCTACATTCAACCACTGAGTGAGGCAGAAATAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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| CDS CCA 72 bp | AGCACACATGTGAGGAAACGTAGTAGTCAGTCACATTaGAATACCTTCAAAATCTTCAGTAAAATATGGGTG | + |
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Preference number: 6 (lower is better) Translates to: STHVRKRSSQSH*NTFKIFSKIWV Trigger: CACCCATATTTTACTGAAGATTTTGAAGGTATTCCAATGTGACTGACTACTACGTTTCCTCACATGTGTGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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| CDS CAA 72 bp | AATACCTTCAAAATCTTCAGTAAAATATGGGTGACGTaGACGAATAGTTCATTCTCCCTATGGAGCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: NTFKIFSKIWVT*TNSSFSLWSCP Trigger: TGGACAGCTCCATAGGGAGAATGAACTATTCGTCAACGTCACCCATATTTTACTGAAGATTTTGAAGGTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000505908.2 ENST00000671389.1 |
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