Pregenerated sensors for LINC01841 (Homo sapiens)
Ensembl gene IDs: ENSG00000266913Ensembl transcript IDs: ENST00000586698.1, ENST00000588438.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGGCATGGGCGTGGCCAGAGCCTCGGGCAGGCATCCCAGGCTCCCTaGTGTCTCTCTCATCCGCTGGCCTCTGTGCCCTCTTCTCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: GHGRGQSLGQASQAP*CLSHPLASVPSSLP Trigger: GGGAAGAGAAGAGGGCACAGAGGCCAGCGGATGAGAGAGACACCAGGGAGCCTGGGATGCCTGCCCGAGGCTCTGGCCACGCCCATGCCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS CCA 90 bp | TGGCCTTTCCTCTGTGTGCTTAGCGGGACAGGCAGGGCATGGGCGTaGCCAGAGCCTCGGGCAGGCATCCCAGGCTCCCTGGTGTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: WPFLCVLSGTGRAWA*PEPRAGIPGSLVSL Trigger: GAGAGACACCAGGGAGCCTGGGATGCCTGCCCGAGGCTCTGGCCACGCCCATGCCCTGCCTGTCCCGCTAAGCACACAGAGGAAAGGCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS TCA 90 bp | GGGCAGCTGTATGTCGTAGCAGCGCGTGGAGGACAATTTTGGCTGTaGCAACGTCACGCCCGCTGCGGGGAGTTGATCTGCAAGCCACAA | + |
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Preference number: 5 (lower is better) Translates to: GQLYVVAARGGQFWL*QRHARCGELICKPQ Trigger: TTGTGGCTTGCAGATCAACTCCCCGCAGCGGGCGTGACGTTGTCACAGCCAAAATTGTCCTCCACGCGCTGCTACGACATACAGCTGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS CCA 90 bp | CAGCTCGATTTGAGTGGGACAGACAGGCTTGTGTCTGGGTCAGGGTaGAGGTGCCAAGCTCCTGTTCCAGCCATCAGCAGTCTTGCCCCA | + |
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Preference number: 5 (lower is better) Translates to: QLDLSGTDRLVSGSG*RCQAPVPAISSLAP Trigger: TGGGGCAAGACTGCTGATGGCTGGAACAGGAGCTTGGCACCTCCACCCTGACCCAGACACAAGCCTGTCTGTCCCACTCAAATCGAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS CCA 90 bp | AGTCTCTGGCCAGCTCGATTTGAGTGGGACAGACAGGCTTGTGTCTaGGTCAGGGTGGAGGTGCCAAGCTCCTGTTCCAGCCATCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: SLWPARFEWDRQACV*VRVEVPSSCSSHQQ Trigger: CTGCTGATGGCTGGAACAGGAGCTTGGCACCTCCACCCTGACCCAGACACAAGCCTGTCTGTCCCACTCAAATCGAGCTGGCCAGAGACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS CCA 90 bp | CTTGGGAACCAACACAGTTGTAGTCTCTGGCCAGCTCGATTTGAGTaGGACAGACAGGCTTGTGTCTGGGTCAGGGTGGAGGTGCCAAGC | + |
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Preference number: 5 (lower is better) Translates to: LGNQHSCSLWPARFE*DRQACVWVRVEVPS Trigger: GCTTGGCACCTCCACCCTGACCCAGACACAAGCCTGTCTGTCCCACTCAAATCGAGCTGGCCAGAGACTACAACTGTGTTGGTTCCCAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS CCA 90 bp | CTTCTGGCTTTTCTATGTCTTGGGAACCAACACAGTTGTAGTCTCTaGCCAGCTCGATTTGAGTGGGACAGACAGGCTTGTGTCTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: LLAFLCLGNQHSCSL*PARFEWDRQACVWV Trigger: GACCCAGACACAAGCCTGTCTGTCCCACTCAAATCGAGCTGGCCAGAGACTACAACTGTGTTGGTTCCCAAGACATAGAAAAGCCAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS CCA 72 bp | CGTGGCCAGAGCCTCGGGCAGGCATCCCAGGCTCCCTaGTGTCTCTCTCATCCGCTGGCCTCTGTGCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: RGQSLGQASQAP*CLSHPLASVPS Trigger: AGAGGGCACAGAGGCCAGCGGATGAGAGAGACACCAGGGAGCCTGGGATGCCTGCCCGAGGCTCTGGCCACG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS CAA 72 bp | GCAGCTGTATGTCGTAGCAGCGCGTGGAGGACAATTTaGGCTGTGACAACGTCACGCCCGCTGCGGGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: AAVCRSSAWRTI*AVTTSRPLRGV Trigger: AACTCCCCGCAGCGGGCGTGACGTTGTCACAGCCAAAATTGTCCTCCACGCGCTGCTACGACATACAGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS CAA 90 bp | GTCCAGAGGGCAGCTGTATGTCGTAGCAGCGCGTGGAGGACAATTTaGGCTGTGACAACGTCACGCCCGCTGCGGGGAGTTGATCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: VQRAAVCRSSAWRTI*AVTTSRPLRGVDLQ Trigger: TTGCAGATCAACTCCCCGCAGCGGGCGTGACGTTGTCACAGCCAAAATTGTCCTCCACGCGCTGCTACGACATACAGCTGCCCTCTGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS TCA 72 bp | TATGTCGTAGCAGCGCGTGGAGGACAATTTTGGCTGTaGCAACGTCACGCCCGCTGCGGGGAGTTGATCTGC | + |
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Preference number: 6 (lower is better) Translates to: YVVAARGGQFWL*QRHARCGELIC Trigger: GCAGATCAACTCCCCGCAGCGGGCGTGACGTTGTCACAGCCAAAATTGTCCTCCACGCGCTGCTACGACATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS TCA 72 bp | TTTGGCTGTGACAACGTCACGCCCGCTGCGGGGAGTTaGTCTGCAAGCCACAAACGTCATTCATTCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: FGCDNVTPAAGS*SASHKRHSFLS Trigger: GGAGAGGAATGAATGACGTTTGTGGCTTGCAGATCAACTCCCCGCAGCGGGCGTGACGTTGTCACAGCCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS CCA 72 bp | CAACACAGTTGTAGTCTCTGGCCAGCTCGATTTGAGTaGGACAGACAGGCTTGTGTCTGGGTCAGGGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: QHSCSLWPARFE*DRQACVWVRVE Trigger: CTCCACCCTGACCCAGACACAAGCCTGTCTGTCCCACTCAAATCGAGCTGGCCAGAGACTACAACTGTGTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS CAA 90 bp | TATGTCTTGGGAACCAACACAGTTGTAGTCTCTGGCCAGCTCGATTaGAGTGGGACAGACAGGCTTGTGTCTGGGTCAGGGTGGAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: YVLGTNTVVVSGQLD*SGTDRLVSGSGWRC Trigger: GCACCTCCACCCTGACCCAGACACAAGCCTGTCTGTCCCACTCAAATCGAGCTGGCCAGAGACTACAACTGTGTTGGTTCCCAAGACATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS TCA 72 bp | ACATGGCCTTTCCTCTGTGTGCTGAAATCTCAGCACTaGGGGAGCCTGAAGCAGGAGGATGTCTTGAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: TWPFLCVLKSQH*GSLKQEDVLSP Trigger: TGGGCTCAAGACATCCTCCTGCTTCAGGCTCCCTCAGTGCTGAGATTTCAGCACACAGAGGAAAGGCCATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS CAA 72 bp | GACCAACCCGGGCAACATGGCAAGACTTCTCGTCTCTaGTACCTGGAGGGAGAAAGAGCTGGAATATTGGTG | + |
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Preference number: 6 (lower is better) Translates to: DQPGQHGKTSRL*YLEGERAGILV Trigger: CACCAATATTCCAGCTCTTTCTCCCTCCAGGTACAAGAGACGAGAAGTCTTGCCATGTTGCCCGGGTTGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS CAA 90 bp | AAGACTTCTCGTCTCTTGTACCTGGAGGGAGAAAGAGCTGGAATATaGGTGAATCGCTCAGTGATCATAGCAGTGTCCCTGGGTGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: KTSRLLYLEGERAGI*VNRSVIIAVSLGEV Trigger: GACCTCACCCAGGGACACTGCTATGATCACTGAGCGATTCACCAATATTCCAGCTCTTTCTCCCTCCAGGTACAAGAGACGAGAAGTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS CAA 72 bp | CGTCTCTTGTACCTGGAGGGAGAAAGAGCTGGAATATaGGTGAATCGCTCAGTGATCATAGCAGTGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: RLLYLEGERAGI*VNRSVIIAVSL Trigger: CAGGGACACTGCTATGATCACTGAGCGATTCACCAATATTCCAGCTCTTTCTCCCTCCAGGTACAAGAGACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS CCA 72 bp | TTTCTATGTCTTGGGAACCAACACAGTTGTAGTCTCTaGCCAGCTCGATTTGAGTGGGACAGACAGGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: FLCLGNQHSCSL*PARFEWDRQAC Trigger: ACAAGCCTGTCTGTCCCACTCAAATCGAGCTGGCCAGAGACTACAACTGTGTTGGTTCCCAAGACATAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586698.1 |
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| CDS CAA 90 bp | ATCTGCAAGCCACAAACGTCATTCATTCCTCTCCACCTCCAGGATTaGGAACATCTCCCCGGACCACAGATTTTTCCTTCAATCAACTTG | + |
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Preference number: 6 (lower is better) Translates to: ICKPQTSFIPLHLQD*EHLPGPQIFPSINL Trigger: CAAGTTGATTGAAGGAAAAATCTGTGGTCCGGGGAGATGTTCCAAATCCTGGAGGTGGAGAGGAATGAATGACGTTTGTGGCTTGCAGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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| CDS CCA 72 bp | GACTTCTCGTCTCTTGTACCTGGAGGGAGAAAGAGCTaGAATATTGGTGAATCGCTCAGTGATCATAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: DFSSLVPGGRKS*NIGESLSDHSS Trigger: ACTGCTATGATCACTGAGCGATTCACCAATATTCCAGCTCTTTCTCCCTCCAGGTACAAGAGACGAGAAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588438.1 |
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