Pregenerated sensors for LINC01840 (Homo sapiens)
Ensembl gene IDs: ENSG00000230215Ensembl transcript IDs: ENST00000421870.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGCCCGGCGGCTTTGGTGTTTCTTAAAGATTCCCAGGTAGTTAGGTaGCTACAGTCATGGGCCCCTGGCTTAGTTGGGAAGTGCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: RPAALVFLKDSQVVR*LQSWAPGLVGKCFI Trigger: GATGAAGCACTTCCCAACTAAGCCAGGGGCCCATGACTGTAGTCACCTAACTACCTGGGAATCTTTAAGAAACACCAAAGCCGCCGGGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000421870.1 |
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| CDS GCA 90 bp | GGAAGTGCTTCATCTCTGAGACACCAGGATTCGAATCCCCAGTTTTaGCGCTTAACAGCTTGGTGGCCATGGATCTGCCTCTCTAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: GSASSLRHQDSNPQF*RLTAWWPWICLSSP Trigger: GGGACTAGAGAGGCAGATCCATGGCCACCAAGCTGTTAAGCGGCAAAACTGGGGATTCGAATCCTGGTGTCTCAGAGATGAAGCACTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000421870.1 |
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| CDS CCA 90 bp | AGACACCAGGATTCGAATCCCCAGTTTTGCCGCTTAACAGCTTGGTaGCCATGGATCTGCCTCTCTAGTCCCATTTCCTCCTCCACCCTT | + |
|
Preference number: 5 (lower is better) Translates to: RHQDSNPQFCRLTAW*PWICLSSPISSSTL Trigger: AAGGGTGGAGGAGGAAATGGGACTAGAGAGGCAGATCCATGGCCACCAAGCTGTTAAGCGGCAAAACTGGGGATTCGAATCCTGGTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000421870.1 |
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| CDS GCA 72 bp | CAGTTTTGCCGCTTAACAGCTTGGTGGCCATGGATCTaGCTCTCTAGTCCCATTTCCTCCTCCACCCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: QFCRLTAWWPWI*LSSPISSSTLP Trigger: AGGAAGGGTGGAGGAGGAAATGGGACTAGAGAGGCAGATCCATGGCCACCAAGCTGTTAAGCGGCAAAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000421870.1 |
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| CDS GCA 72 bp | TCATCTCTGAGACACCAGGATTCGAATCCCCAGTTTTaGCGCTTAACAGCTTGGTGGCCATGGATCTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: SSLRHQDSNPQF*RLTAWWPWICL Trigger: GAGGCAGATCCATGGCCACCAAGCTGTTAAGCGGCAAAACTGGGGATTCGAATCCTGGTGTCTCAGAGATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000421870.1 |
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| CDS CCA 72 bp | GATTCGAATCCCCAGTTTTGCCGCTTAACAGCTTGGTaGCCATGGATCTGCCTCTCTAGTCCCATTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: DSNPQFCRLTAW*PWICLSSPISS Trigger: GGAGGAAATGGGACTAGAGAGGCAGATCCATGGCCACCAAGCTGTTAAGCGGCAAAACTGGGGATTCGAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000421870.1 |
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| CDS CCA 72 bp | CAGGATTCGAATCCCCAGTTTTGCCGCTTAACAGCTTaGTGGCCATGGATCTGCCTCTCTAGTCCCATTTCC | + |
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Preference number: 6 (lower is better) Translates to: QDSNPQFCRLTA*WPWICLSSPIS Trigger: GGAAATGGGACTAGAGAGGCAGATCCATGGCCACCAAGCTGTTAAGCGGCAAAACTGGGGATTCGAATCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000421870.1 |
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| CDS CAA 72 bp | TTCATCTCTGAGACACCAGGATTCGAATCCCCAGTTTaGCCGCTTAACAGCTTGGTGGCCATGGATCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: FISETPGFESPV*PLNSLVAMDLP Trigger: AGGCAGATCCATGGCCACCAAGCTGTTAAGCGGCAAAACTGGGGATTCGAATCCTGGTGTCTCAGAGATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000421870.1 |
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| CDS TCA 72 bp | GCTTTGGTGTTTCTTAAAGATTCCCAGGTAGTTAGGTaGCTACAGTCATGGGCCCCTGGCTTAGTTGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: ALVFLKDSQVVR*LQSWAPGLVGK Trigger: CTTCCCAACTAAGCCAGGGGCCCATGACTGTAGTCACCTAACTACCTGGGAATCTTTAAGAAACACCAAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000421870.1 |
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