Pregenerated sensors for LINC01799 (Homo sapiens)
Ensembl gene IDs: ENSG00000230525Ensembl transcript IDs: ENST00000411701.1, ENST00000426260.5, ENST00000657974.1, ENST00000659816.1, ENST00000664251.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTCAAAGAAATGGCTGGTTTGTGTCATTCATCCCTGCAGTCCTCATaGCAGATTTTGTTTATTCTCTTTCCAAGTAATGTCAGCTTCACT | + |
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Preference number: 5 (lower is better) Translates to: LKEMAGLCHSSLQSS*QILFILFPSNVSFT Trigger: AGTGAAGCTGACATTACTTGGAAAGAGAATAAACAAAATCTGTCATGAGGACTGCAGGGATGAATGACACAAACCAGCCATTTCTTTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000426260.5 ENST00000657974.1 ENST00000659816.1 |
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| CDS TCA 90 bp | ATGCTTCACCTCTTTCATGAAACCAGAAGATTGAAGAAAGGCGACTaGCTGAGAAGCTATTCCTACTGGAAACTAAGATTCCTCTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: MLHLFHETRRLKKGD*LRSYSYWKLRFLFD Trigger: ATCAAAGAGGAATCTTAGTTTCCAGTAGGAATAGCTTCTCAGTCAGTCGCCTTTCTTCAATCTTCTGGTTTCATGAAAGAGGTGAAGCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664251.1 |
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| CDS CCA 90 bp | CCCAGATCCCATAAGTCTGAATTAATCAGCCTTTCCTGTATATGTTaGACCCTTGTTTGTTCTTCTGGTATAGATAGAGCTTCTCACATT | + |
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Preference number: 5 (lower is better) Translates to: PRSHKSELISLSCIC*TLVCSSGIDRASHI Trigger: AATGTGAGAAGCTCTATCTATACCAGAAGAACAAACAAGGGTCCAACATATACAGGAAAGGCTGATTAATTCAGACTTATGGGATCTGGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664251.1 |
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| CDS GCA 72 bp | GAGGAATGGAAGAGGGTGGCAGGGGCTTTCAACATCTaGCCCAGTGTTATTGAGGTGCAGCAGAAACAAAAA | + |
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Preference number: 6 (lower is better) Translates to: EEWKRVAGAFNI*PSVIEVQQKQK Trigger: TTTTTGTTTCTGCTGCACCTCAATAACACTGGGGCAGATGTTGAAAGCCCCTGCCACCCTCTTCCATTCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664251.1 |
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| CDS CCA 72 bp | CTTGCTCTTCTTTCTGCTAGCACTGAACCTTCACACTaGGACTCAGCTGCCATGCTTCACCTCTTTCATGAA | + |
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Preference number: 6 (lower is better) Translates to: LALLSASTEPSH*DSAAMLHLFHE Trigger: TTCATGAAAGAGGTGAAGCATGGCAGCTGAGTCCCAGTGTGAAGGTTCAGTGCTAGCAGAAAGAAGAGCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664251.1 |
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| CDS CAA 72 bp | ACACTGCTGAGCACACACCAACTGCTTTGTAAATATTaGCTGAAGATGGGCAGAGAGGAATGGAAGAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: TLLSTHQLLCKY*LKMGREEWKRV Trigger: CACCCTCTTCCATTCCTCTCTGCCCATCTTCAGCAAATATTTACAAAGCAGTTGGTGTGTGCTCAGCAGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664251.1 |
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| CDS CAA 72 bp | CTCTTATGTTTTATCCTCTTCTGGGCTATATGTTCCTaGAGGGCAGGTACACATCAGTCACCTCTGTATCTC | + |
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Preference number: 6 (lower is better) Translates to: LLCFILFWAICS*RAGTHQSPLYL Trigger: GAGATACAGAGGTGACTGATGTGTACCTGCCCTCAAGGAACATATAGCCCAGAAGAGGATAAAACATAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664251.1 |
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| CDS TCA 72 bp | TCTTATGTTTTATCCTCTTCTGGGCTATATGTTCCTTaGGGGCAGGTACACATCAGTCACCTCTGTATCTCT | + |
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Preference number: 6 (lower is better) Translates to: SYVLSSSGLYVP*GQVHISHLCIS Trigger: AGAGATACAGAGGTGACTGATGTGTACCTGCCCTCAAGGAACATATAGCCCAGAAGAGGATAAAACATAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664251.1 |
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| CDS TCA 72 bp | CATGTGGATGAAACTCATTCTGTTTGTGATTTCCATTaGGTAGCTGCTCCAAGTTACATAAGACTTCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: HVDETHSVCDFH*VAAPSYIRLPA Trigger: GGCAGGAAGTCTTATGTAACTTGGAGCAGCTACTCAATGGAAATCACAAACAGAATGAGTTTCATCCACATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000411701.1 ENST00000426260.5 ENST00000657974.1 ENST00000659816.1 ENST00000664251.1 |
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| CDS TCA 72 bp | CTCTTTCATGAAACCAGAAGATTGAAGAAAGGCGACTaGCTGAGAAGCTATTCCTACTGGAAACTAAGATTC | + |
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Preference number: 6 (lower is better) Translates to: LFHETRRLKKGD*LRSYSYWKLRF Trigger: GAATCTTAGTTTCCAGTAGGAATAGCTTCTCAGTCAGTCGCCTTTCTTCAATCTTCTGGTTTCATGAAAGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664251.1 |
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| CDS CCA 72 bp | CATAAGTCTGAATTAATCAGCCTTTCCTGTATATGTTaGACCCTTGTTTGTTCTTCTGGTATAGATAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: HKSELISLSCIC*TLVCSSGIDRA Trigger: AGCTCTATCTATACCAGAAGAACAAACAAGGGTCCAACATATACAGGAAAGGCTGATTAATTCAGACTTATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664251.1 |
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