Pregenerated sensors for LINC01772 (Homo sapiens)
Ensembl gene IDs: ENSG00000226029Ensembl transcript IDs: ENST00000457898.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTGAACAGCAGGTGGGGATCACAGTGACCACCTGGGAGTCTATCTaGCACACCTCCCAGTGCATCCAAATTCTGTTGTGCAGAGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: CEQQVGITVTTWESI*HTSQCIQILLCRGQ Trigger: TTGCCCTCTGCACAACAGAATTTGGATGCACTGGGAGGTGTGGCAGATAGACTCCCAGGTGGTCACTGTGATCCCCACCTGCTGTTCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS TCA 90 bp | TTGTGTGGTTGCTGGCAGCATTTGCTTTCTTGCAGACTGCTGGACTaGGCTTCAGTTTCTTGTTGGCTGTCAGAGGCTACCTCAGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: LCGCWQHLLSCRLLD*ASVSCWLSEATSVP Trigger: AGGAACTGAGGTAGCCTCTGACAGCCAACAAGAAACTGAAGCTCAGTCCAGCAGTCTGCAAGAAAGCAAATGCTGCCAGCAACCACACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS TCA 90 bp | CTACCATCCACCCACCAGTTTGTAAACTCCAGTCAGGGGTGTAATTaGAGTGATGCCTGGTTTGGGATTGAGTTTTCCTGGAGATTCTGG | + |
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Preference number: 5 (lower is better) Translates to: LPSTHQFVNSSQGCN*SDAWFGIEFSWRFW Trigger: CCAGAATCTCCAGGAAAACTCAATCCCAAACCAGGCATCACTTCAATTACACCCCTGACTGGAGTTTACAAACTGGTGGGTGGATGGTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS GCA 90 bp | CTACAGTTTCTTAATCAGAGTGGCTATTTCCATAACAATAAAAACTaGTTCTTACAGAATCCTCAGGCAAAAGAAGTGTTGTGGCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: LQFLNQSGYFHNNKN*FLQNPQAKEVLWLF Trigger: AAAAAGCCACAACACTTCTTTTGCCTGAGGATTCTGTAAGAAGCAGTTTTTATTGTTATGGAAATAGCCACTCTGATTAAGAAACTGTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS GCA 72 bp | CAGTCTGGGCACAGCTTAGCTGGTCCTCTGCAAGGCTaGAGTCAGTGTTGGTCAGGCCTGGGGTCTCACCTG | + |
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Preference number: 6 (lower is better) Translates to: QSGHSLAGPLQG*SQCWSGLGSHL Trigger: CAGGTGAGACCCCAGGCCTGACCAACACTGACTGCAGCCTTGCAGAGGACCAGCTAAGCTGTGCCCAGACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS CAA 72 bp | CAGCTTAGCTGGTCCTCTGCAAGGCTGCAGTCAGTGTaGGTCAGGCCTGGGGTCTCACCTGAAGGCTTACCT | + |
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Preference number: 6 (lower is better) Translates to: QLSWSSARLQSV*VRPGVSPEGLP Trigger: AGGTAAGCCTTCAGGTGAGACCCCAGGCCTGACCAACACTGACTGCAGCCTTGCAGAGGACCAGCTAAGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS CAA 90 bp | GGGGTCTCACCTGAAGGCTTACCTGGGAGTGATCAGCCTCCAAGCTaGTGTGGTTGCTGGCAGCATTTGCTTTCTTGCAGACTGCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: GVSPEGLPGSDQPPS*CGCWQHLLSCRLLD Trigger: GTCCAGCAGTCTGCAAGAAAGCAAATGCTGCCAGCAACCACACAAGCTTGGAGGCTGATCACTCCCAGGTAAGCCTTCAGGTGAGACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS TCA 72 bp | ACAATGCAATGTGCATCTGCTAGTGCCTCATCCGAGTaGCGCTCAGGTGAAGGAACAGCCTGTGGCCACACG | + |
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Preference number: 6 (lower is better) Translates to: TMQCASASASSE*RSGEGTACGHT Trigger: CGTGTGGCCACAGGCTGTTCCTTCACCTGAGCGTCACTCGGATGAGGCACTAGCAGATGCACATTGCATTGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS GCA 72 bp | GAATTCTCTAGGGTCTCACTGCTGCCTAGACTGGAGTaGGAGGCCGTGATCATAGCTCACTGCAGCCTCAAA | + |
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Preference number: 6 (lower is better) Translates to: EFSRVSLLPRLE*EAVIIAHCSLK Trigger: TTTGAGGCTGCAGTGAGCTATGATCACGGCCTCGCACTCCAGTCTAGGCAGCAGTGAGACCCTAGAGAATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS GCA 72 bp | TTACCTGGGAGTGATCAGCCTCCAAGCTTGTGTGGTTaGTGGCAGCATTTGCTTTCTTGCAGACTGCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: LPGSDQPPSLCG*WQHLLSCRLLD Trigger: GTCCAGCAGTCTGCAAGAAAGCAAATGCTGCCAGCAACCACACAAGCTTGGAGGCTGATCACTCCCAGGTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS CAA 72 bp | CCTGAAGGCTTACCTGGGAGTGATCAGCCTCCAAGCTaGTGTGGTTGCTGGCAGCATTTGCTTTCTTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: PEGLPGSDQPPS*CGCWQHLLSCR Trigger: TCTGCAAGAAAGCAAATGCTGCCAGCAACCACACAAGCTTGGAGGCTGATCACTCCCAGGTAAGCCTTCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS TCA 72 bp | TGCTGGCAGCATTTGCTTTCTTGCAGACTGCTGGACTaGGCTTCAGTTTCTTGTTGGCTGTCAGAGGCTACC | + |
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Preference number: 6 (lower is better) Translates to: CWQHLLSCRLLD*ASVSCWLSEAT Trigger: GGTAGCCTCTGACAGCCAACAAGAAACTGAAGCTCAGTCCAGCAGTCTGCAAGAAAGCAAATGCTGCCAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS GCA 72 bp | ATCAGCCTCCAAGCTTGTGTGGTTGCTGGCAGCATTTaGTTTCTTGCAGACTGCTGGACTGAGCTTCAGTTT | + |
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Preference number: 6 (lower is better) Translates to: ISLQACVVAGSI*FLADCWTELQF Trigger: AAACTGAAGCTCAGTCCAGCAGTCTGCAAGAAAGCAAATGCTGCCAGCAACCACACAAGCTTGGAGGCTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS CAA 72 bp | ACTCCAGTCAGGGGTGTAATTGAAGTGATGCCTGGTTaGGGATTGAGTTTTCCTGGAGATTCTGGTCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: TPVRGVIEVMPG*GLSFPGDSGPV Trigger: TACAGGACCAGAATCTCCAGGAAAACTCAATCCCAAACCAGGCATCACTTCAATTACACCCCTGACTGGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS TCA 72 bp | CCTCCCTACCATGATGAACTGTTCTGGGTACTTACCTaGCTCCAGAGAAAGGTCATTAAGGTCAAACAATGC | + |
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Preference number: 6 (lower is better) Translates to: PPYHDELFWVLT*LQRKVIKVKQC Trigger: GCATTGTTTGACCTTAATGACCTTTCTCTGGAGTCAGGTAAGTACCCAGAACAGTTCATCATGGTAGGGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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| CDS CAA 72 bp | GATTCCCACCTCAAACACACTTTGCTAACCTTTGTGTaGGTTATCTATTGCTGCATAACCTTACCAGAAACT | + |
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Preference number: 6 (lower is better) Translates to: DSHLKHTLLTFV*VIYCCITLPET Trigger: AGTTTCTGGTAAGGTTATGCAGCAATAGATAACCAACACAAAGGTTAGCAAAGTGTGTTTGAGGTGGGAATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457898.1 |
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