Pregenerated sensors for LINC01730 (Homo sapiens)
Ensembl gene IDs: ENSG00000275491Ensembl transcript IDs: ENST00000613868.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTGTTTCCCTGTCTCCCCCGGTCCTCTTGTAGTCATCCCAAGGGCTaGCTTAGCTCTCTTCTCCTGGAGCTCTGGAAGGCCATAGCATCC | + |
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Preference number: 5 (lower is better) Translates to: VFPCLPRSSCSHPKG*LSSLLLELWKAIAS Trigger: GGATGCTATGGCCTTCCAGAGCTCCAGGAGAAGAGAGCTAAGCCAGCCCTTGGGATGACTACAAGAGGACCGGGGGAGACAGGGAAACAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS TCA 90 bp | GGCTGCAAAACAGCGGCTTCTCCATCATTACGCAACTGGCCTCTCTaGTCGTTTCCAGATTGCTCTCGGCCATGCACCTCCTTGTCTAAA | + |
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Preference number: 5 (lower is better) Translates to: GCKTAASPSLRNWPL*SFPDCSRPCTSLSK Trigger: TTTAGACAAGGAGGTGCATGGCCGAGAGCAATCTGGAAACGATCAGAGAGGCCAGTTGCGTAATGATGGAGAAGCCGCTGTTTTGCAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS TCA 90 bp | CATGTGTCCTTGGAGGTGTACATATCAGTAGATTTCAGCCTCTACTaGAATCTTCTACTGAAGCCTTCTACTCCCCTTGTGTTTCCCTGT | + |
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Preference number: 5 (lower is better) Translates to: HVSLEVYISVDFSLY*NLLLKPSTPLVFPC Trigger: ACAGGGAAACACAAGGGGAGTAGAAGGCTTCAGTAGAAGATTTCAGTAGAGGCTGAAATCTACTGATATGTACACCTCCAAGGACACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS GCA 72 bp | AGATGGGAGGATCACTTGAGCCCAGAACGTCAAGCCTaGAGTGAGCCACGTTTGTGCCACCGCACTCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: RWEDHLSPERQA*SEPRLCHRTPA Trigger: GGCTGGAGTGCGGTGGCACAAACGTGGCTCACTGCAGGCTTGACGTTCTGGGCTCAAGTGATCCTCCCATCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS CCA 72 bp | TGTCTCCCCCGGTCCTCTTGTAGTCATCCCAAGGGCTaGCTTAGCTCTCTTCTCCTGGAGCTCTGGAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: CLPRSSCSHPKG*LSSLLLELWKA Trigger: GGCCTTCCAGAGCTCCAGGAGAAGAGAGCTAAGCCAGCCCTTGGGATGACTACAAGAGGACCGGGGGAGACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS CAA 72 bp | TCCCAGCTACTCGGGAGGCCAAGATGGGAGGATCACTaGAGCCCAGAACGTCAAGCCTGCAGTGAGCCACGT | + |
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Preference number: 6 (lower is better) Translates to: SQLLGRPRWEDH*SPERQACSEPR Trigger: ACGTGGCTCACTGCAGGCTTGACGTTCTGGGCTCAAGTGATCCTCCCATCTTGGCCTCCCGAGTAGCTGGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS TCA 72 bp | ACAGCGGCTTCTCCATCATTACGCAACTGGCCTCTCTaGTCGTTTCCAGATTGCTCTCGGCCATGCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: TAASPSLRNWPL*SFPDCSRPCTS Trigger: GGAGGTGCATGGCCGAGAGCAATCTGGAAACGATCAGAGAGGCCAGTTGCGTAATGATGGAGAAGCCGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS CAA 72 bp | TCTGGAGTGGGGGTAACCCGGAGGGAGCCTCCTGAATaGATGGAGATGTCCTACATCTTGAGCTTTGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: SGVGVTRREPPE*MEMSYILSFVV Trigger: CACCACAAAGCTCAAGATGTAGGACATCTCCATCAATTCAGGAGGCTCCCTCCGGGTTACCCCCACTCCAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS CAA 72 bp | GGAGATGTCCTACATCTTGAGCTTTGTGGTGGTCCCTaGGGTCTACGCTCCATGCTGAAGATCTGTGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: GDVLHLELCGGP*GLRSMLKICAL Trigger: AAGGGCACAGATCTTCAGCATGGAGCGTAGACCCAAGGGACCACCACAAAGCTCAAGATGTAGGACATCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS CAA 72 bp | AGGGAGCCTCCTGAATTGATGGAGATGTCCTACATCTaGAGCTTTGTGGTGGTCCCTTGGGTCTACGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: REPPELMEMSYI*SFVVVPWVYAP Trigger: TGGAGCGTAGACCCAAGGGACCACCACAAAGCTCAAGATGTAGGACATCTCCATCAATTCAGGAGGCTCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS TCA 72 bp | AGCTTTGTGGTGGTCCCTTGGGTCTACGCTCCATGCTaGAGATCTGTGCCCTTGATGAAATGTCAATTATTC | + |
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Preference number: 6 (lower is better) Translates to: SFVVVPWVYAPC*RSVPLMKCQLF Trigger: GAATAATTGACATTTCATCAAGGGCACAGATCTTCAGCATGGAGCGTAGACCCAAGGGACCACCACAAAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS TCA 72 bp | ATAATTTCACATCCCGGAACATTCTCTCTCCAGGCATaGTTTTCGTGGCTGCAAAACAGCGGCTTCTCCATC | + |
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Preference number: 6 (lower is better) Translates to: IISHPGTFSLQA*FSWLQNSGFSI Trigger: GATGGAGAAGCCGCTGTTTTGCAGCCACGAAAATCATGCCTGGAGAGAGAATGTTCCGGGATGTGAAATTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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| CDS TCA 72 bp | TTGGAGGTGTACATATCAGTAGATTTCAGCCTCTACTaGAATCTTCTACTGAAGCCTTCTACTCCCCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: LEVYISVDFSLY*NLLLKPSTPLV Trigger: CACAAGGGGAGTAGAAGGCTTCAGTAGAAGATTTCAGTAGAGGCTGAAATCTACTGATATGTACACCTCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000613868.1 |
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