Pregenerated sensors for LINC01702 (Homo sapiens)
Ensembl gene IDs: ENSG00000235200Ensembl transcript IDs: ENST00000230113.5, ENST00000634424.2, ENST00000635350.1, ENST00000655752.1, ENST00000657338.1, ENST00000657691.1, ENST00000664968.1, ENST00000667745.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCATTAAGCAAAGATCTCTGGCTGCTGCTTGAAGGAAGTAGTTGGTaGCTTAGAAAAGACTCTGTAATCCAGCTACTCAGGAGGCTGAGA | + |
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Preference number: 5 (lower is better) Translates to: PLSKDLWLLLEGSSW*LRKDSVIQLLRRLR Trigger: TCTCAGCCTCCTGAGTAGCTGGATTACAGAGTCTTTTCTAAGGCACCAACTACTTCCTTCAAGCAGCAGCCAGAGATCTTTGCTTAATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000230113.5 ENST00000635350.1 ENST00000655752.1 ENST00000657691.1 ENST00000664968.1 |
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| CDS CCA 90 bp | TCTGGGTCTCTCCTCTGTGTTTCTCAGCCATTAAGCAAAGATCTCTaGCTGCTGCTTGAAGGAAGTAGTTGGTGCCTTAGAAAAGACTCT | + |
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Preference number: 5 (lower is better) Translates to: SGSLLCVSQPLSKDL*LLLEGSSWCLRKDS Trigger: AGAGTCTTTTCTAAGGCACCAACTACTTCCTTCAAGCAGCAGCCAGAGATCTTTGCTTAATGGCTGAGAAACACAGAGGAGAGACCCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000230113.5 ENST00000635350.1 ENST00000655752.1 ENST00000657338.1 ENST00000657691.1 ENST00000664968.1 ENST00000667745.1 |
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| CDS CCA 72 bp | TCTTCCGGCTTCTGGTGCTCCAGGCATTCCTTGACTTaGCTGAATAACTCCAGTCTCTGCTCCATCTTCATG | + |
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Preference number: 6 (lower is better) Translates to: SSGFWCSRHSLT*LNNSSLCSIFM Trigger: CATGAAGATGGAGCAGAGACTGGAGTTATTCAGCCAAGTCAAGGAATGCCTGGAGCACCAGAAGCCGGAAGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000230113.5 ENST00000634424.2 ENST00000635350.1 ENST00000655752.1 ENST00000657338.1 ENST00000657691.1 ENST00000664968.1 ENST00000667745.1 |
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| CDS CAA 72 bp | ACTCCAGCCTCTTTAGGAACAGGATCTGTGTCTTATTaGTCCCTGTATCCCCGCTTCCAGCACTGTACCCCA | + |
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Preference number: 6 (lower is better) Translates to: TPASLGTGSVSY*SLYPRFQHCTP Trigger: TGGGGTACAGTGCTGGAAGCGGGGATACAGGGACAAATAAGACACAGATCCTGTTCCTAAAGAGGCTGGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000230113.5 ENST00000634424.2 |
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| CDS GCA 72 bp | AAAGATCTCTGGCTGCTGCTTGAAGGAAGTAGTTGGTaGCTTAGAAAAGACTCTGTAATCCAGCTACTCAGG | + |
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Preference number: 6 (lower is better) Translates to: KDLWLLLEGSSW*LRKDSVIQLLR Trigger: CCTGAGTAGCTGGATTACAGAGTCTTTTCTAAGGCACCAACTACTTCCTTCAAGCAGCAGCCAGAGATCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000230113.5 ENST00000635350.1 ENST00000655752.1 ENST00000657691.1 ENST00000664968.1 |
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