Pregenerated sensors for LINC01700 (Homo sapiens)
Ensembl gene IDs: ENSG00000232837Ensembl transcript IDs: ENST00000433952.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCTGGCATGTTGGAGTCAGCTCCGGAACAGCAGCCCCATCCCACTaGGTCTTGGGGGAGATAAGAAGGGTCTCAAGTCCCAACAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: GWHVGVSSGTAAPSH*VLGEIRRVSSPNSH Trigger: GTGACTGTTGGGACTTGAGACCCTTCTTATCTCCCCCAAGACTCAGTGGGATGGGGCTGCTGTTCCGGAGCTGACTCCAACATGCCAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS TCA 90 bp | AACAGCCGTAAGTGTACCTGCAGGTGTATATCAAGTTCAGACATCTaGTGCCAGGTCCCAGGCCCTGGCAAGGCCAGAAGGCCCAATATT | + |
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Preference number: 5 (lower is better) Translates to: NSRKCTCRCISSSDI*CQVPGPGKARRPNI Trigger: AATATTGGGCCTTCTGGCCTTGCCAGGGCCTGGGACCTGGCATCAGATGTCTGAACTTGATATACACCTGCAGGTACACTTACGGCTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS GCA 90 bp | GGTTCTCTTGTGCCAAGTAACCCAGTGAGTTGGGCAGGATGGGCATaGTGTGCCATTTACACAAGAAGAAATGGAGTGTTCAAAAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: GSLVPSNPVSWAGWA*CAIYTRRNGVFKRG Trigger: GCCTCTTTTGAACACTCCATTTCTTCTTGTGTAAATGGCACAGCATGCCCATCCTGCCCAACTCACTGGGTTACTTGGCACAAGAGAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CCA 90 bp | GAGTTGGGCAGGATGGGCATGCTGTGCCATTTACACAAGAAGAAATaGAGTGTTCAAAAGAGGCCATGTAAACCACGAGAACCGTGCAAA | + |
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Preference number: 5 (lower is better) Translates to: ELGRMGMLCHLHKKK*SVQKRPCKPREPCK Trigger: TTTGCACGGTTCTCGTGGTTTACATGGCCTCTTTTGAACACTCCATTTCTTCTTGTGTAAATGGCACAGCATGCCCATCCTGCCCAACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CCA 90 bp | TCGAAGCACTTTTATGGTTCTCTTGTGCCAAGTAACCCAGTGAGTTaGGCAGGATGGGCATGCTGTGCCATTTACACAAGAAGAAATGGA | + |
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Preference number: 5 (lower is better) Translates to: SKHFYGSLVPSNPVS*AGWACCAIYTRRNG Trigger: TCCATTTCTTCTTGTGTAAATGGCACAGCATGCCCATCCTGCCCAACTCACTGGGTTACTTGGCACAAGAGAACCATAAAAGTGCTTCGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS TCA 90 bp | ATTTTTCGAAGCACTTTTATGGTTCTCTTGTGCCAAGTAACCCAGTaGGTTGGGCAGGATGGGCATGCTGTGCCATTTACACAAGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: IFRSTFMVLLCQVTQ*VGQDGHAVPFTQEE Trigger: TTCTTCTTGTGTAAATGGCACAGCATGCCCATCCTGCCCAACTCACTGGGTTACTTGGCACAAGAGAACCATAAAAGTGCTTCGAAAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CCA 90 bp | TTTTATGGTTCTCTTGTGCCAAGTAACCCAGTGAGTTGGGCAGGATaGGCATGCTGTGCCATTTACACAAGAAGAAATGGAGTGTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: FYGSLVPSNPVSWAG*ACCAIYTRRNGVFK Trigger: TTTGAACACTCCATTTCTTCTTGTGTAAATGGCACAGCATGCCCATCCTGCCCAACTCACTGGGTTACTTGGCACAAGAGAACCATAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS GCA 90 bp | ACAGCCCTTGGTAAAGAACCAGATTCCAGAGGGCACACAAAATACTaGTTCCTGGTTTCACACCACCTAGACTTAATGATAACAATGACA | + |
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Preference number: 5 (lower is better) Translates to: TALGKEPDSRGHTKY*FLVSHHLDLMITMT Trigger: TGTCATTGTTATCATTAAGTCTAGGTGGTGTGAAACCAGGAAGCAGTATTTTGTGTGCCCTCTGGAATCTGGTTCTTTACCAAGGGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS TCA 90 bp | AAAACAACCAACCAATACCAGGAGGCCAAACGTTGTTTAGAATCATaGAACCATAGAATGTTACCACTGGGAGGCATCTTGGAAATTCAG | + |
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Preference number: 5 (lower is better) Translates to: KTTNQYQEAKRCLES*NHRMLPLGGILEIQ Trigger: CTGAATTTCCAAGATGCCTCCCAGTGGTAACATTCTATGGTTTCATGATTCTAAACAACGTTTGGCCTCCTGGTATTGGTTGGTTGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS TCA 90 bp | GGAATTTCTTTTGACTTTCACAATCTGTCTTTAAAGGCATGGATGTaGCCTGCGTATTTCAGAGTAGGAAACCAAGATGTAGAGAGATTG | + |
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Preference number: 5 (lower is better) Translates to: GISFDFHNLSLKAWM*PAYFRVGNQDVERL Trigger: CAATCTCTCTACATCTTGGTTTCCTACTCTGAAATACGCAGGTCACATCCATGCCTTTAAAGACAGATTGTGAAAGTCAAAAGAAATTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CCA 90 bp | TCATTCTCGCTGAATGCCTTTTTCAAAGCCCATGTAATTCATTGCTaGGGTTGTATTTCATGTTTAGGTTGTCTGGCTTTCTTTGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: SFSLNAFFKAHVIHC*GCISCLGCLAFFVL Trigger: AAGAACAAAGAAAGCCAGACAACCTAAACATGAAATACAACCCCAGCAATGAATTACATGGGCTTTGAAAAAGGCATTCAGCGAGAATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS GCA 72 bp | TCCCAGGGAAACCAGAGGGCCAGGTCACCCCACCCGTaGCCCAAGCCCATGCCAGTCCCATTCAGCCATGTG | + |
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Preference number: 6 (lower is better) Translates to: SQGNQRARSPHP*PKPMPVPFSHV Trigger: CACATGGCTGAATGGGACTGGCATGGGCTTGGGGCACGGGTGGGGTGACCTGGCCCTCTGGTTTCCCTGGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS TCA 72 bp | GTTGGAGTCAGCTCCGGAACAGCAGCCCCATCCCACTaGGTCTTGGGGGAGATAAGAAGGGTCTCAAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: VGVSSGTAAPSH*VLGEIRRVSSP Trigger: GGGACTTGAGACCCTTCTTATCTCCCCCAAGACTCAGTGGGATGGGGCTGCTGTTCCGGAGCTGACTCCAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CCA 72 bp | CGTGCCCCAAGCCCATGCCAGTCCCATTCAGCCATGTaGCTCCCAATCCCATCCTCTATTGCATTAGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: RAPSPCQSHSAM*LPIPSSIALGL Trigger: GAGGCCTAATGCAATAGAGGATGGGATTGGGAGCCACATGGCTGAATGGGACTGGCATGGGCTTGGGGCACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CCA 72 bp | TCAGCCTCCAGGCAAATTTCCAAAAGGCTGGCATGTTaGAGTCAGCTCCGGAACAGCAGCCCCATCCCACTG | + |
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Preference number: 6 (lower is better) Translates to: SASRQISKRLAC*SQLRNSSPIPL Trigger: CAGTGGGATGGGGCTGCTGTTCCGGAGCTGACTCCAACATGCCAGCCTTTTGGAAATTTGCCTGGAGGCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CAA 72 bp | TTCAGCCTCCAGGCAAATTTCCAAAAGGCTGGCATGTaGGAGTCAGCTCCGGAACAGCAGCCCCATCCCACT | + |
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Preference number: 6 (lower is better) Translates to: FSLQANFQKAGM*ESAPEQQPHPT Trigger: AGTGGGATGGGGCTGCTGTTCCGGAGCTGACTCCAACATGCCAGCCTTTTGGAAATTTGCCTGGAGGCTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CAA 90 bp | TACCTTCAGTTCAGCCTCCAGGCAAATTTCCAAAAGGCTGGCATGTaGGAGTCAGCTCCGGAACAGCAGCCCCATCCCACTGAGTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: YLQFSLQANFQKAGM*ESAPEQQPHPTESW Trigger: CCAAGACTCAGTGGGATGGGGCTGCTGTTCCGGAGCTGACTCCAACATGCCAGCCTTTTGGAAATTTGCCTGGAGGCTGAACTGAAGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS GCA 72 bp | CCTTTAGTCCTGGGTACATCGAGGGTTCCTCAGGCCTaGTGTAGATCCAGACGTCTTAGCAAATCCAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: PLVLGTSRVPQA*CRSRRLSKSRV Trigger: AACCCTGGATTTGCTAAGACGTCTGGATCTACAGCAGGCCTGAGGAACCCTCGATGTACCCAGGACTAAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CAA 90 bp | TTGGGCCAGAGGAAGGAGGAGTCCAAAAGAGGGAAGGGACAGCCCTaGGTAAAGAACCAGATTCCAGAGGGCACACAAAATACTGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LGQRKEESKRGKGQP*VKNQIPEGTQNTAS Trigger: GGAAGCAGTATTTTGTGTGCCCTCTGGAATCTGGTTCTTTACCAAGGGCTGTCCCTTCCCTCTTTTGGACTCCTCCTTCCTCTGGCCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS GCA 72 bp | GTGCCAAGTAACCCAGTGAGTTGGGCAGGATGGGCATaGTGTGCCATTTACACAAGAAGAAATGGAGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: VPSNPVSWAGWA*CAIYTRRNGVF Trigger: GAACACTCCATTTCTTCTTGTGTAAATGGCACAGCATGCCCATCCTGCCCAACTCACTGGGTTACTTGGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CAA 72 bp | AGGAAGGAGGAGTCCAAAAGAGGGAAGGGACAGCCCTaGGTAAAGAACCAGATTCCAGAGGGCACACAAAAT | + |
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Preference number: 6 (lower is better) Translates to: RKEESKRGKGQP*VKNQIPEGTQN Trigger: ATTTTGTGTGCCCTCTGGAATCTGGTTCTTTACCAAGGGCTGTCCCTTCCCTCTTTTGGACTCCTCCTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CCA 72 bp | TCTCTTGTGCCAAGTAACCCAGTGAGTTGGGCAGGATaGGCATGCTGTGCCATTTACACAAGAAGAAATGGA | + |
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Preference number: 6 (lower is better) Translates to: SLVPSNPVSWAG*ACCAIYTRRNG Trigger: TCCATTTCTTCTTGTGTAAATGGCACAGCATGCCCATCCTGCCCAACTCACTGGGTTACTTGGCACAAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS GCA 72 bp | GGTAAAGAACCAGATTCCAGAGGGCACACAAAATACTaGTTCCTGGTTTCACACCACCTAGACTTAATGATA | + |
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Preference number: 6 (lower is better) Translates to: GKEPDSRGHTKY*FLVSHHLDLMI Trigger: TATCATTAAGTCTAGGTGGTGTGAAACCAGGAAGCAGTATTTTGTGTGCCCTCTGGAATCTGGTTCTTTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS GCA 72 bp | CTTTCACAATCTGTCTTTAAAGGCATGGATGTGACCTaGGTATTTCAGAGTAGGAAACCAAGATGTAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: LSQSVFKGMDVT*VFQSRKPRCRE Trigger: CTCTCTACATCTTGGTTTCCTACTCTGAAATACGCAGGTCACATCCATGCCTTTAAAGACAGATTGTGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CCA 72 bp | CTGAATGCCTTTTTCAAAGCCCATGTAATTCATTGCTaGGGTTGTATTTCATGTTTAGGTTGTCTGGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LNAFFKAHVIHC*GCISCLGCLAF Trigger: GAAAGCCAGACAACCTAAACATGAAATACAACCCCAGCAATGAATTACATGGGCTTTGAAAAAGGCATTCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS TCA 72 bp | TTTGACTTTCACAATCTGTCTTTAAAGGCATGGATGTaGCCTGCGTATTTCAGAGTAGGAAACCAAGATGTA | + |
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Preference number: 6 (lower is better) Translates to: FDFHNLSLKAWM*PAYFRVGNQDV Trigger: TACATCTTGGTTTCCTACTCTGAAATACGCAGGTCACATCCATGCCTTTAAAGACAGATTGTGAAAGTCAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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| CDS CAA 90 bp | ATAATCATTCTCGCTGAATGCCTTTTTCAAAGCCCATGTAATTCATaGCTGGGGTTGTATTTCATGTTTAGGTTGTCTGGCTTTCTTTGT | + |
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Preference number: 6 (lower is better) Translates to: IIILAECLFQSPCNS*LGLYFMFRLSGFLC Trigger: ACAAAGAAAGCCAGACAACCTAAACATGAAATACAACCCCAGCAATGAATTACATGGGCTTTGAAAAAGGCATTCAGCGAGAATGATTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433952.1 |
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