Pregenerated sensors for LINC01689 (Homo sapiens)
Ensembl gene IDs: ENSG00000224832Ensembl transcript IDs: ENST00000416218.1, ENST00000642623.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCACAAAGAAAGAAGAATAGTGAGGCTGGATCGCCAGCAAAGGCCTaGGTGGGGAAGCCACACCTTAGTTTGATGAGCTTCCTCCAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: AQRKKNSEAGSPAKA*VGKPHLSLMSFLQK Trigger: CTTTTGGAGGAAGCTCATCAAACTAAGGTGTGGCTTCCCCACTCAGGCCTTTGCTGGCGATCCAGCCTCACTATTCTTCTTTCTTTGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416218.1 |
||
| CDS GCA 90 bp | TACATTTATCTTCTCAGTGCAGCACATCGCTATCAGTTTCTCACCTaGCAGAACAGGTGTCCTCTAGGAAGAGTTGTTTTATATACATTC | + |
|
Preference number: 5 (lower is better) Translates to: YIYLLSAAHRYQFLT*QNRCPLGRVVLYTF Trigger: GAATGTATATAAAACAACTCTTCCTAGAGGACACCTGTTCTGGCAGGTGAGAAACTGATAGCGATGTGCTGCACTGAGAAGATAAATGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416218.1 |
||
| CDS CCA 90 bp | CCTTGCCTTAGTCCACCTGGGCTGCTAAAACAAAACCCGATAATCTaGGTAGCTTATAAACAACAGAAATTTACTTGTTATAGTTCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: PCLSPPGLLKQNPII*VAYKQQKFTCYSSG Trigger: TCCAGAACTATAACAAGTAAATTTCTGTTGTTTATAAGCTACCCAGATTATCGGGTTTTGTTTTAGCAGCCCAGGTGGACTAAGGCAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416218.1 |
||
| CDS CCA 90 bp | CCTCTAGCTGTGTCCTCATATAGTGAAAGGGACAAGGTAGTTCTCTaGTTCCTCATTTATAAGGATACTAATTCTATTCATGAGGGTTAC | + |
|
Preference number: 5 (lower is better) Translates to: PLAVSSYSERDKVVL*FLIYKDTNSIHEGY Trigger: GTAACCCTCATGAATAGAATTAGTATCCTTATAAATGAGGAACCAGAGAACTACCTTGTCCCTTTCACTATATGAGGACACAGCTAGAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416218.1 ENST00000642623.1 |
||
| CDS TCA 72 bp | AAGAAGAATAGTGAGGCTGGATCGCCAGCAAAGGCCTaGGTGGGGAAGCCACACCTTAGTTTGATGAGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: KKNSEAGSPAKA*VGKPHLSLMSF Trigger: GAAGCTCATCAAACTAAGGTGTGGCTTCCCCACTCAGGCCTTTGCTGGCGATCCAGCCTCACTATTCTTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416218.1 |
||
| CDS GCA 72 bp | CTTCTCAGTGCAGCACATCGCTATCAGTTTCTCACCTaGCAGAACAGGTGTCCTCTAGGAAGAGTTGTTTTA | + |
|
Preference number: 6 (lower is better) Translates to: LLSAAHRYQFLT*QNRCPLGRVVL Trigger: TAAAACAACTCTTCCTAGAGGACACCTGTTCTGGCAGGTGAGAAACTGATAGCGATGTGCTGCACTGAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416218.1 |
||
| CDS TCA 72 bp | GTATTCACTGCTGTACTGGAGGCCATTCCAGTGGCCTaGGTGTATCACCATATTTCTTCATCCTGGAATGTT | + |
|
Preference number: 6 (lower is better) Translates to: VFTAVLEAIPVA*VYHHISSSWNV Trigger: AACATTCCAGGATGAAGAAATATGGTGATACACTCAGGCCACTGGAATGGCCTCCAGTACAGCAGTGAATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416218.1 ENST00000642623.1 |
||
| CDS CCA 72 bp | ATGTCCCCCAAATCTCCATCTTCTAATACATCACCTTaGGGGTTAGGATTCCAACCCATAAATTTAGAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: MSPKSPSSNTSP*GLGFQPINLEG Trigger: CCCCTCTAAATTTATGGGTTGGAATCCTAACCCCCAAGGTGATGTATTAGAAGATGGAGATTTGGGGGACAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000416218.1 ENST00000642623.1 |
||
| CDS GCA 72 bp | GTATTATTCATGGTCACTGATTGGAGATTCAGTAGTTaGCCTGCATGTATGCATAAGGATCAAGCACTTTAT | + |
|
Preference number: 6 (lower is better) Translates to: VLFMVTDWRFSS*PACMHKDQALY Trigger: ATAAAGTGCTTGATCCTTATGCATACATGCAGGGCAACTACTGAATCTCCAATCAGTGACCATGAATAATAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416218.1 ENST00000642623.1 |
||
| CDS CAA 72 bp | TCCTCTGGAAGAGCCATTGTCTTCGTTCTTTCAGTGTaGAATATAGTCATTCTATCCCATAGTCTTCAAAAC | + |
|
Preference number: 6 (lower is better) Translates to: SSGRAIVFVLSV*NIVILSHSLQN Trigger: GTTTTGAAGACTATGGGATAGAATGACTATATTCAACACTGAAAGAACGAAGACAATGGCTCTTCCAGAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000416218.1 ENST00000642623.1 |
||
| CDS GCA 72 bp | TCACTGATTGGAGATTCAGTAGTTGCCCTGCATGTATaGATAAGGATCAAGCACTTTATTGGAAACAAATTT | + |
|
Preference number: 6 (lower is better) Translates to: SLIGDSVVALHV*IRIKHFIGNKF Trigger: AAATTTGTTTCCAATAAAGTGCTTGATCCTTATGCATACATGCAGGGCAACTACTGAATCTCCAATCAGTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416218.1 ENST00000642623.1 |
||
| CDS CCA 72 bp | GTGTCCTCATATAGTGAAAGGGACAAGGTAGTTCTCTaGTTCCTCATTTATAAGGATACTAATTCTATTCAT | + |
|
Preference number: 6 (lower is better) Translates to: VSSYSERDKVVL*FLIYKDTNSIH Trigger: ATGAATAGAATTAGTATCCTTATAAATGAGGAACCAGAGAACTACCTTGTCCCTTTCACTATATGAGGACAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416218.1 ENST00000642623.1 |
||