Pregenerated sensors for LINC01674 (Homo sapiens)

Ensembl gene IDs: ENSG00000228159

Ensembl transcript IDs: ENST00000660298.1, ENST00000664515.1, ENST00000671654.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CACAGCGAGGCGAGCCGTGGTGCCACACGCTCCAGCCTCCAGCTGTaGCAAGTGACTACCCCTTCTCCTGGTCCTCCAAGCCTGGCACGG	+
Preference number: 5 (lower is better) Translates to: HSEASRGATRSSLQL*QVTTPSPGPPSLAR Trigger: CCGTGCCAGGCTTGGAGGACCAGGAGAAGGGGTAGTCACTTGCCACAGCTGGAGGCTGGAGCGTGTGGCACCACGGCTCGCCTCGCTGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000660298.1 ENST00000664515.1 ENST00000671654.1
CDS TCA 90 bp	AGGCGAGCCGTGGTGCCACACGCTCCAGCCTCCAGCTGTGGCAAGTaGCTACCCCTTCTCCTGGTCCTCCAAGCCTGGCACGGAGCAGCT	+
Preference number: 5 (lower is better) Translates to: RRAVVPHAPASSCGK*LPLLLVLQAWHGAA Trigger: AGCTGCTCCGTGCCAGGCTTGGAGGACCAGGAGAAGGGGTAGTCACTTGCCACAGCTGGAGGCTGGAGCGTGTGGCACCACGGCTCGCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000660298.1 ENST00000664515.1 ENST00000671654.1
CDS GCA 72 bp	TGCCGCCAGCGCCCACCACAGCGAGGCGAGCCGTGGTaGCACACGCTCCAGCCTCCAGCTGTGGCAAGTGAC	+
Preference number: 6 (lower is better) Translates to: CRQRPPQRGEPW*HTLQPPAVASD Trigger: GTCACTTGCCACAGCTGGAGGCTGGAGCGTGTGGCACCACGGCTCGCCTCGCTGTGGTGGGCGCTGGCGGCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000660298.1 ENST00000664515.1 ENST00000671654.1
CDS CCA 72 bp	CTCTGCCGCCAGCGCCCACCACAGCGAGGCGAGCCGTaGTGCCACACGCTCCAGCCTCCAGCTGTGGCAAGT	+
Preference number: 6 (lower is better) Translates to: LCRQRPPQRGEP*CHTLQPPAVAS Trigger: ACTTGCCACAGCTGGAGGCTGGAGCGTGTGGCACCACGGCTCGCCTCGCTGTGGTGGGCGCTGGCGGCAGAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000660298.1 ENST00000664515.1 ENST00000671654.1
CDS CCA 72 bp	GCGAGCCGTGGTGCCACACGCTCCAGCCTCCAGCTGTaGCAAGTGACTACCCCTTCTCCTGGTCCTCCAAGC	+
Preference number: 6 (lower is better) Translates to: ASRGATRSSLQL*QVTTPSPGPPS Trigger: GCTTGGAGGACCAGGAGAAGGGGTAGTCACTTGCCACAGCTGGAGGCTGGAGCGTGTGGCACCACGGCTCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000660298.1 ENST00000664515.1 ENST00000671654.1
CDS TCA 72 bp	GTGGTGCCACACGCTCCAGCCTCCAGCTGTGGCAAGTaGCTACCCCTTCTCCTGGTCCTCCAAGCCTGGCAC	+
Preference number: 6 (lower is better) Translates to: VVPHAPASSCGK*LPLLLVLQAWH Trigger: GTGCCAGGCTTGGAGGACCAGGAGAAGGGGTAGTCACTTGCCACAGCTGGAGGCTGGAGCGTGTGGCACCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000660298.1 ENST00000664515.1 ENST00000671654.1
CDS CCA 72 bp	CAGCCTCCAGCTGTGGCAAGTGACTACCCCTTCTCCTaGTCCTCCAAGCCTGGCACGGAGCAGCTGCGCAAG	+
Preference number: 6 (lower is better) Translates to: QPPAVASDYPFS*SSKPGTEQLRK Trigger: CTTGCGCAGCTGCTCCGTGCCAGGCTTGGAGGACCAGGAGAAGGGGTAGTCACTTGCCACAGCTGGAGGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000660298.1 ENST00000664515.1 ENST00000671654.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu