Pregenerated sensors for LINC01653 (Homo sapiens)
Ensembl gene IDs: ENSG00000232100Ensembl transcript IDs: ENST00000456026.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACTTCTGTCTACCAAGCTCTTGATTCCTATACAACATCCCCTGGATaGCGAAGGAGGCACAATTTCTCCTGTGAGCTCTTCCATGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: TSVYQALDSYTTSPG*RRRHNFSCELFHAL Trigger: GAGAGCATGGAAGAGCTCACAGGAGAAATTGTGCCTCCTTCGCCATCCAGGGGATGTTGTATAGGAATCAAGAGCTTGGTAGACAGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456026.1 |
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| CDS TCA 90 bp | CTATACAACATCCCCTGGATGGCGAAGGAGGCACAATTTCTCCTGTaGGCTCTTCCATGCTCTCCAGTACAAACAAGCACAAACATAATC | + |
|
Preference number: 5 (lower is better) Translates to: LYNIPWMAKEAQFLL*ALPCSPVQTSTNII Trigger: GATTATGTTTGTGCTTGTTTGTACTGGAGAGCATGGAAGAGCTCACAGGAGAAATTGTGCCTCCTTCGCCATCCAGGGGATGTTGTATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456026.1 |
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| CDS TCA 72 bp | GTGAGCTGTGATCATGACACTGTACTCCAGCCCGCGTaGCTCTTAGGTAGGAGGTTTAGTCACTTGCCACAG | + |
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Preference number: 6 (lower is better) Translates to: VSCDHDTVLQPA*LLGRRFSHLPQ Trigger: CTGTGGCAAGTGACTAAACCTCCTACCTAAGAGTCACGCGGGCTGGAGTACAGTGTCATGATCACAGCTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456026.1 |
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| CDS CAA 72 bp | GCAGCTCCGCCTCTAAGACTTCTGTCTACCAAGCTCTaGATTCCTATACAACATCCCCTGGATGGCGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: AAPPLRLLSTKL*IPIQHPLDGEG Trigger: TCCTTCGCCATCCAGGGGATGTTGTATAGGAATCAAGAGCTTGGTAGACAGAAGTCTTAGAGGCGGAGCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456026.1 |
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| CDS CCA 72 bp | TACCAAGCTCTTGATTCCTATACAACATCCCCTGGATaGCGAAGGAGGCACAATTTCTCCTGTGAGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: YQALDSYTTSPG*RRRHNFSCELF Trigger: GAAGAGCTCACAGGAGAAATTGTGCCTCCTTCGCCATCCAGGGGATGTTGTATAGGAATCAAGAGCTTGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456026.1 |
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