Pregenerated sensors for LINC01641 (Homo sapiens)
Ensembl gene IDs: ENSG00000234277Ensembl transcript IDs: ENST00000436377.1, ENST00000445817.1, ENST00000660249.1
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGTGTTGAGGTTGCAGCAAAGGCAAGAGAGCTGTGTTGGGTTGAGTaGCTGTCACACTGTGCAGTCAGGGCTCAGAGGCTGCATCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: GVEVAAKARELCWVE*LSHCAVRAQRLHLA Trigger: AGCCAGATGCAGCCTCTGAGCCCTGACTGCACAGTGTGACAGTCACTCAACCCAACACAGCTCTCTTGCCTTTGCTGCAACCTCAACACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CCA 90 bp | AATCTCCTGGAAGGCTTGTCAAAGGAGATTGCTGGGCTTCACCCCTaGAGTTTCAGTAGGGCTGGGGTGGTAGACAAGTTCCCAGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: NLLEGLSKEIAGLHP*SFSRAGVVDKFPGK Trigger: TTTGCCTGGGAACTTGTCTACCACCCCAGCCCTACTGAAACTCCAGGGGTGAAGCCCAGCAATCTCCTTTGACAAGCCTTCCAGGAGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CCA 90 bp | TCTTCCTGCTTCCTAGTCATTTATCTGAGCTTGCTTGTGGTTCTATaGCACACATCTACTGAGGTCCTGCATGGCAGTTTCGGGAGCACA | + |
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Preference number: 5 (lower is better) Translates to: SSCFLVIYLSLLVVL*HTSTEVLHGSFGST Trigger: TGTGCTCCCGAAACTGCCATGCAGGACCTCAGTAGATGTGTGCCATAGAACCACAAGCAAGCTCAGATAAATGACTAGGAAGCAGGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436377.1 |
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| CDS GCA 90 bp | GCAGCACAGTCTCCTGAAGAGCTGGCTCAAAAGGAAATGCACAGATaGCCGGACTATTTGTTAAAGGAAATGGCACATTATCCTCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: AAQSPEELAQKEMHR*PDYLLKEMAHYPLP Trigger: GGGAAGAGGATAATGTGCCATTTCCTTTAACAAATAGTCCGGGCATCTGTGCATTTCCTTTTGAGCCAGCTCTTCAGGAGACTGTGCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS GCA 90 bp | TTCCTTCCAACTCTGAGATGCTGTGATTCTGTGTTGGCTTGTAGGTaGACCACTCCAAGCCTGTCTTTACATGATGTTTTCCCTGTGTGT | + |
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Preference number: 5 (lower is better) Translates to: FLPTLRCCDSVLACR*TTPSLSLHDVFPVC Trigger: ACACACAGGGAAAACATCATGTAAAGACAGGCTTGGAGTGGTGCACCTACAAGCCAACACAGAATCACAGCATCTCAGAGTTGGAAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445817.1 ENST00000660249.1 |
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| CDS CCA 90 bp | CCACAGAGAGCTGGAAAGATTTTTAAATGCCATGGTGGGCTGGAATaGCTGGACACCAGCATAGATGGACTGATGAAATGGGAAGAGATT | + |
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Preference number: 5 (lower is better) Translates to: PQRAGKIFKCHGGLE*LDTSIDGLMKWEEI Trigger: AATCTCTTCCCATTTCATCAGTCCATCTATGCTGGTGTCCAGCCATTCCAGCCCACCATGGCATTTAAAAATCTTTCCAGCTCTCTGTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS TCA 90 bp | TTCCCAGGCAAATGTTACTCATGTTGGTTTTCTACTGAGAACCACTaGTTTGGGGGAATGGATGAACAATTTGCTTCCTCCAAGCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: FPGKCYSCWFSTENH*FGGMDEQFASSKPS Trigger: AGAGGGCTTGGAGGAAGCAAATTGTTCATCCATTCCCCCAAATCAGTGGTTCTCAGTAGAAAACCAACATGAGTAACATTTGCCTGGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS GCA 90 bp | TACAAGGTTCCTTTTATTTGGTCTTCATGCAGAGAAGCCATCAGATaGATCTTCCTGCTTCCTAGTCATTTATCTGAGCTTGCTTGTGGT | + |
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Preference number: 5 (lower is better) Translates to: YKVPFIWSSCREAIR*IFLLPSHLSELACG Trigger: ACCACAAGCAAGCTCAGATAAATGACTAGGAAGCAGGAAGATGCATCTGATGGCTTCTCTGCATGAAGACCAAATAAAAGGAACCTTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436377.1 |
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| CDS CCA 90 bp | GACTATTTGTTAAAGGAAATGGCACATTATCCTCTTCCCAACATCTaGTCATTCCTGAAAGACAGTCAAGCCCCGATAATACTGTTGACT | + |
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Preference number: 5 (lower is better) Translates to: DYLLKEMAHYPLPNI*SFLKDSQAPIILLT Trigger: AGTCAACAGTATTATCGGGGCTTGACTGTCTTTCAGGAATGACCAGATGTTGGGAAGAGGATAATGTGCCATTTCCTTTAACAAATAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS TCA 90 bp | GCATTACCAAGCATAGCTCAACGAAGTACGACTGGCAATATAATCTaGAACATCAATATGATTCTACAATGTTTTGCCATTAGAGGCAAT | + |
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Preference number: 5 (lower is better) Translates to: ALPSIAQRSTTGNII*NINMILQCFAIRGN Trigger: ATTGCCTCTAATGGCAAAACATTGTAGAATCATATTGATGTTTCAGATTATATTGCCAGTCGTACTTCGTTGAGCTATGCTTGGTAATGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660249.1 |
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| CDS GCA 72 bp | GGACGCCTTGGGGAGGGGACGAAGGGTCACCCACATTaGTGTTCTGTTCTGGGAGCCAGGAATGCATACTTC | + |
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Preference number: 6 (lower is better) Translates to: GRLGEGTKGHPH*CSVLGARNAYF Trigger: GAAGTATGCATTCCTGGCTCCCAGAACAGAACAGCAATGTGGGTGACCCTTCGTCCCCTCCCCAAGGCGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CCA 72 bp | GAAGGCTTGTCAAAGGAGATTGCTGGGCTTCACCCCTaGAGTTTCAGTAGGGCTGGGGTGGTAGACAAGTTC | + |
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Preference number: 6 (lower is better) Translates to: EGLSKEIAGLHP*SFSRAGVVDKF Trigger: GAACTTGTCTACCACCCCAGCCCTACTGAAACTCCAGGGGTGAAGCCCAGCAATCTCCTTTGACAAGCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CCA 72 bp | CCTTCCCTGTCACAGCAGCACAGTCTCCTGAAGAGCTaGCTCAAAAGGAAATGCACAGATGCCCGGACTATT | + |
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Preference number: 6 (lower is better) Translates to: PSLSQQHSLLKS*LKRKCTDARTI Trigger: AATAGTCCGGGCATCTGTGCATTTCCTTTTGAGCCAGCTCTTCAGGAGACTGTGCTGCTGTGACAGGGAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CAA 72 bp | CACATCAGAATCTCCTGGAAGGCTTGTCAAAGGAGATaGCTGGGCTTCACCCCTGGAGTTTCAGTAGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: HIRISWKACQRR*LGFTPGVSVGL Trigger: CAGCCCTACTGAAACTCCAGGGGTGAAGCCCAGCAATCTCCTTTGACAAGCCTTCCAGGAGATTCTGATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CAA 90 bp | ATGGCTGGACACCAGCATAGATGGACTGATGAAATGGGAAGAGATTaGGCAGGACGCAGGGTGTTGAGGTTGCAGCAAAGGCAAGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: MAGHQHRWTDEMGRD*AGRRVLRLQQRQES Trigger: GCTCTCTTGCCTTTGCTGCAACCTCAACACCCTGCGTCCTGCCAAATCTCTTCCCATTTCATCAGTCCATCTATGCTGGTGTCCAGCCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CAA 90 bp | AGATGGACTGATGAAATGGGAAGAGATTTGGCAGGACGCAGGGTGTaGAGGTTGCAGCAAAGGCAAGAGAGCTGTGTTGGGTTGAGTGAC | + |
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Preference number: 6 (lower is better) Translates to: RWTDEMGRDLAGRRV*RLQQRQESCVGLSD Trigger: GTCACTCAACCCAACACAGCTCTCTTGCCTTTGCTGCAACCTCAACACCCTGCGTCCTGCCAAATCTCTTCCCATTTCATCAGTCCATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS GCA 72 bp | TGCTTGTGGTTCTATGGCACACATCTACTGAGGTCCTaGATGGCAGTTTCGGGAGCACACACAGCTTCTCTA | + |
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Preference number: 6 (lower is better) Translates to: CLWFYGTHLLRS*MAVSGAHTASL Trigger: TAGAGAAGCTGTGTGTGCTCCCGAAACTGCCATGCAGGACCTCAGTAGATGTGTGCCATAGAACCACAAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436377.1 |
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| CDS CAA 72 bp | CACCAGCATAGATGGACTGATGAAATGGGAAGAGATTaGGCAGGACGCAGGGTGTTGAGGTTGCAGCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: HQHRWTDEMGRD*AGRRVLRLQQR Trigger: CCTTTGCTGCAACCTCAACACCCTGCGTCCTGCCAAATCTCTTCCCATTTCATCAGTCCATCTATGCTGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CAA 72 bp | GGCCTGAGTTCAGGTGCCAGCTCTGACATTAACTGGTaGAGTACTTTTGAGCAAGCCCTTGATCGCTCTGGT | + |
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Preference number: 6 (lower is better) Translates to: GLSSGASSDINW*STFEQALDRSG Trigger: ACCAGAGCGATCAAGGGCTTGCTCAAAAGTACTCAACCAGTTAATGTCAGAGCTGGCACCTGAACTCAGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660249.1 |
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| CDS CAA 90 bp | AACATCTGGTCATTCCTGAAAGACAGTCAAGCCCCGATAATACTGTaGACTCACTCGAAGCCTGTGTCTTCTTTCCCGAGGGAGGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: NIWSFLKDSQAPIIL*THSKPVSSFPREVE Trigger: CTCCACCTCCCTCGGGAAAGAAGACACAGGCTTCGAGTGAGTCAACAGTATTATCGGGGCTTGACTGTCTTTCAGGAATGACCAGATGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CAA 72 bp | TCAATCTTGAGCTCACATCAGAATCTCCTGGAAGGCTaGTCAAAGGAGATTGCTGGGCTTCACCCCTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: SILSSHQNLLEG*SKEIAGLHPWS Trigger: ACTCCAGGGGTGAAGCCCAGCAATCTCCTTTGACAAGCCTTCCAGGAGATTCTGATGTGAGCTCAAGATTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CAA 90 bp | GGTTTTCTACTGAGAACCACTGATTTGGGGGAATGGATGAACAATTaGCTTCCTCCAAGCCCTCTCCCAGCGTTCCTTGGCTACTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: GFLLRTTDLGEWMNN*LPPSPLPAFLGYLS Trigger: AGACAAGTAGCCAAGGAACGCTGGGAGAGGGCTTGGAGGAAGCAAATTGTTCATCCATTCCCCCAAATCAGTGGTTCTCAGTAGAAAACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CCA 72 bp | TCGGGAGCACACACAGCTTCTCTAAAAGTGTCATTTTaGGGTGTGTCTGCAAGGGTGTTTCTAGAGGAGACT | + |
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Preference number: 6 (lower is better) Translates to: SGAHTASLKVSF*GVSARVFLEET Trigger: AGTCTCCTCTAGAAACACCCTTGCAGACACACCCCAAAATGACACTTTTAGAGAAGCTGTGTGTGCTCCCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436377.1 |
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| CDS CAA 72 bp | TCATTCCTGAAAGACAGTCAAGCCCCGATAATACTGTaGACTCACTCGAAGCCTGTGTCTTCTTTCCCGAGG | + |
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Preference number: 6 (lower is better) Translates to: SFLKDSQAPIIL*THSKPVSSFPR Trigger: CCTCGGGAAAGAAGACACAGGCTTCGAGTGAGTCAACAGTATTATCGGGGCTTGACTGTCTTTCAGGAATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CAA 90 bp | AAGCCATCAGATGCATCTTCCTGCTTCCTAGTCATTTATCTGAGCTaGCTTGTGGTTCTATGGCACACATCTACTGAGGTCCTGCATGGC | + |
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Preference number: 6 (lower is better) Translates to: KPSDASSCFLVIYLS*LVVLWHTSTEVLHG Trigger: GCCATGCAGGACCTCAGTAGATGTGTGCCATAGAACCACAAGCAAGCTCAGATAAATGACTAGGAAGCAGGAAGATGCATCTGATGGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436377.1 |
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| CDS CAA 90 bp | CCTGAAGAGCTGGCTCAAAAGGAAATGCACAGATGCCCGGACTATTaGTTAAAGGAAATGGCACATTATCCTCTTCCCAACATCTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: PEELAQKEMHRCPDY*LKEMAHYPLPNIWS Trigger: TGACCAGATGTTGGGAAGAGGATAATGTGCCATTTCCTTTAACAAATAGTCCGGGCATCTGTGCATTTCCTTTTGAGCCAGCTCTTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS CAA 90 bp | CAGGCAAATGTTACTCATGTTGGTTTTCTACTGAGAACCACTGATTaGGGGGAATGGATGAACAATTTGCTTCCTCCAAGCCCTCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: QANVTHVGFLLRTTD*GEWMNNLLPPSPLP Trigger: TGGGAGAGGGCTTGGAGGAAGCAAATTGTTCATCCATTCCCCCAAATCAGTGGTTCTCAGTAGAAAACCAACATGAGTAACATTTGCCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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| CDS GCA 72 bp | ACTCTGAGATGCTGTGATTCTGTGTTGGCTTGTAGGTaGACCACTCCAAGCCTGTCTTTACATGATGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: TLRCCDSVLACR*TTPSLSLHDVF Trigger: GAAAACATCATGTAAAGACAGGCTTGGAGTGGTGCACCTACAAGCCAACACAGAATCACAGCATCTCAGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445817.1 ENST00000660249.1 |
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| CDS CCA 72 bp | TTCCTAGTCATTTATCTGAGCTTGCTTGTGGTTCTATaGCACACATCTACTGAGGTCCTGCATGGCAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: FLVIYLSLLVVL*HTSTEVLHGSF Trigger: GAAACTGCCATGCAGGACCTCAGTAGATGTGTGCCATAGAACCACAAGCAAGCTCAGATAAATGACTAGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436377.1 |
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| CDS CAA 72 bp | GATGCATCTTCCTGCTTCCTAGTCATTTATCTGAGCTaGCTTGTGGTTCTATGGCACACATCTACTGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: DASSCFLVIYLS*LVVLWHTSTEV Trigger: GACCTCAGTAGATGTGTGCCATAGAACCACAAGCAAGCTCAGATAAATGACTAGGAAGCAGGAAGATGCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436377.1 |
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| CDS CAA 90 bp | TCATATGAAGAATTCCTTCCAACTCTGAGATGCTGTGATTCTGTGTaGGCTTGTAGGTGCACCACTCCAAGCCTGTCTTTACATGATGTT | + |
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Preference number: 6 (lower is better) Translates to: SYEEFLPTLRCCDSV*ACRCTTPSLSLHDV Trigger: AACATCATGTAAAGACAGGCTTGGAGTGGTGCACCTACAAGCCAACACAGAATCACAGCATCTCAGAGTTGGAAGGAATTCTTCATATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445817.1 ENST00000660249.1 |
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| CDS CAA 90 bp | TTCAGAGGGAATGAGGTAGCAGATACAATCAAATCGATGCAACTATaGGCACTTTCTGAGTGTTCAGCATCTATGGGGAACTTCAGCATC | + |
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Preference number: 6 (lower is better) Translates to: FRGNEVADTIKSMQL*ALSECSASMGNFSI Trigger: GATGCTGAAGTTCCCCATAGATGCTGAACACTCAGAAAGTGCCAATAGTTGCATCGATTTGATTGTATCTGCTACCTCATTCCCTCTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660249.1 |
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| CDS CAA 72 bp | ATTTACCTTCTTCGAAGACACTCTAAAAGTGTCATTTaGGGGTGTGTCTGCAAGGGTGTTTCTAGAGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: IYLLRRHSKSVI*GCVCKGVSRGD Trigger: GTCTCCTCTAGAAACACCCTTGCAGACACACCCCAAAATGACACTTTTAGAGTGTCTTCGAAGAAGGTAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660249.1 |
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| CDS TCA 72 bp | AATCAATGTGGTCATATGAAGAATTCCTTCCAACTCTaGGATGCTGTGATTCTGTGTTGGCTTGTAGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: NQCGHMKNSFQL*DAVILCWLVGA Trigger: TGCACCTACAAGCCAACACAGAATCACAGCATCTCAGAGTTGGAAGGAATTCTTCATATGACCACATTGATT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445817.1 ENST00000660249.1 |
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| CDS GCA 72 bp | TTTGTCTCTAAATTCTTTGCTTGTAACCACTCCCTATaGTGTCTTCTCGTGGTGTCACTCATGCATACAAAG | + |
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Preference number: 6 (lower is better) Translates to: FVSKFFACNHSL*CLLVVSLMHTK Trigger: CTTTGTATGCATGAGTGACACCACGAGAAGACAGCATAGGGAGTGGTTACAAGCAAAGAATTTAGAGACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445817.1 |
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