Pregenerated sensors for LINC01616 (Homo sapiens)

Ensembl gene IDs: ENSG00000261340

Ensembl transcript IDs: ENST00000561816.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCTTGTATAACTACTTACTCAGCTCCAACTTCCAGTGCCCTAAGGTaGAGCCTCTCTAAACACCTTACCTCCAGGCCAGGTGGCAGAGGT	+
Preference number: 5 (lower is better) Translates to: ACITTYSAPTSSALR*SLSKHLTSRPGGRG Trigger: ACCTCTGCCACCTGGCCTGGAGGTAAGGTGTTTAGAGAGGCTTCACCTTAGGGCACTGGAAGTTGGAGCTGAGTAAGTAGTTATACAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561816.1
CDS GCA 90 bp	ATGTGGTGTCAGCATAACCTAATGCTTTATCAGGGGTGTCAAATATaGAGCTCAGCTCCTGTGAGGATATTTTCCTTCCCATGCCCAGGA	+
Preference number: 5 (lower is better) Translates to: MWCQHNLMLYQGCQI*SSAPVRIFSFPCPG Trigger: TCCTGGGCATGGGAAGGAAAATATCCTCACAGGAGCTGAGCTGCATATTTGACACCCCTGATAAAGCATTAGGTTATGCTGACACCACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561816.1
CDS GCA 90 bp	GGTCTAACTAAGCATTCCACATGTGTATTTCCCATTCAATATTATTaGTTACAGAACAGAGATCTAAACTCCCCTACCAAGGACCTCTCA	+
Preference number: 5 (lower is better) Translates to: GLTKHSTCVFPIQYY*LQNRDLNSPTKDLS Trigger: TGAGAGGTCCTTGGTAGGGGAGTTTAGATCTCTGTTCTGTAAGCAATAATATTGAATGGGAAATACACATGTGGAATGCTTAGTTAGACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561816.1
CDS CCA 90 bp	AGGAATTTCATTGAATTTATTTTTAGCACCATTCAGGTATTTCACTaGAATCTTGGCCCAATTACTCTGAGCACACAACCTAAAATGCAG	+
Preference number: 5 (lower is better) Translates to: RNFIEFIFSTIQVFH*NLGPITLSTQPKMQ Trigger: CTGCATTTTAGGTTGTGTGCTCAGAGTAATTGGGCCAAGATTCCAGTGAAATACCTGAATGGTGCTAAAAATAAATTCAATGAAATTCCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000561816.1
CDS TCA 72 bp	TTTATCAGGGGTGTCAAATATGCAGCTCAGCTCCTGTaGGGATATTTTCCTTCCCATGCCCAGGAGAGAGAT	+
Preference number: 6 (lower is better) Translates to: FIRGVKYAAQLL*GYFPSHAQERD Trigger: ATCTCTCTCCTGGGCATGGGAAGGAAAATATCCTCACAGGAGCTGAGCTGCATATTTGACACCCCTGATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561816.1
CDS GCA 72 bp	CAGCATAACCTAATGCTTTATCAGGGGTGTCAAATATaGAGCTCAGCTCCTGTGAGGATATTTTCCTTCCCA	+
Preference number: 6 (lower is better) Translates to: QHNLMLYQGCQI*SSAPVRIFSFP Trigger: TGGGAAGGAAAATATCCTCACAGGAGCTGAGCTGCATATTTGACACCCCTGATAAAGCATTAGGTTATGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561816.1
CDS GCA 72 bp	AAGCAGAACAATATACACCAACAACACAAGAACATATaGACGCGAGTACACACAAGTGCCCAGCAAATTTTA	+
Preference number: 6 (lower is better) Translates to: KQNNIHQQHKNI*TRVHTSAQQIL Trigger: TAAAATTTGCTGGGCACTTGTGTGTACTCGCGTGCATATGTTCTTGTGTTGTTGGTGTATATTGTTCTGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561816.1
CDS GCA 72 bp	CTTCTTTACACTGGGCATCTGTATTATGCTGTCTTCTaGCCCAATGAACTAACACATAAAAGAATCATCTTA	+
Preference number: 6 (lower is better) Translates to: LLYTGHLYYAVF*PNELTHKRIIL Trigger: TAAGATGATTCTTTTATGTGTTAGTTCATTGGGGCAGAAGACAGCATAATACAGATGCCCAGTGTAAAGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561816.1
CDS CCA 72 bp	ATTGAATTTATTTTTAGCACCATTCAGGTATTTCACTaGAATCTTGGCCCAATTACTCTGAGCACACAACCT	+
Preference number: 6 (lower is better) Translates to: IEFIFSTIQVFH*NLGPITLSTQP Trigger: AGGTTGTGTGCTCAGAGTAATTGGGCCAAGATTCCAGTGAAATACCTGAATGGTGCTAAAAATAAATTCAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000561816.1

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