Pregenerated sensors for LINC01607 (Homo sapiens)
Ensembl gene IDs: ENSG00000272138Ensembl transcript IDs: ENST00000607172.1, ENST00000607754.2, ENST00000666705.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCTGGGAGTGGGTCATTCTCAGCCACTGCACATACTGGAGGGTTGTaGGGTCAGTCCAGCTCACTGTCCACAGAGGACCTTTCCGCGTCC | + |
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Preference number: 5 (lower is better) Translates to: AGSGSFSATAHTGGL*GQSSSLSTEDLSAS Trigger: GGACGCGGAAAGGTCCTCTGTGGACAGTGAGCTGGACTGACCTCACAACCCTCCAGTATGTGCAGTGGCTGAGAATGACCCACTCCCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS GCA 90 bp | CCCTTGGCTGCAGAAAGTTGCTGGGAGTGGGTCATTCTCAGCCACTaGACATACTGGAGGGTTGTGAGGTCAGTCCAGCTCACTGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: PLAAESCWEWVILSH*TYWRVVRSVQLTVH Trigger: GTGGACAGTGAGCTGGACTGACCTCACAACCCTCCAGTATGTGCAGTGGCTGAGAATGACCCACTCCCAGCAACTTTCTGCAGCCAAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS CCA 90 bp | GCAGAAAGTTGCTGGGAGTGGGTCATTCTCAGCCACTGCACATACTaGAGGGTTGTGAGGTCAGTCCAGCTCACTGTCCACAGAGGACCT | + |
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Preference number: 5 (lower is better) Translates to: AESCWEWVILSHCTY*RVVRSVQLTVHRGP Trigger: AGGTCCTCTGTGGACAGTGAGCTGGACTGACCTCACAACCCTCCAGTATGTGCAGTGGCTGAGAATGACCCACTCCCAGCAACTTTCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS CCA 90 bp | GGCTTCAGCTCAGGGAGGATTAACCCCTTGGCTGCAGAAAGTTGCTaGGAGTGGGTCATTCTCAGCCACTGCACATACTGGAGGGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: GFSSGRINPLAAESC*EWVILSHCTYWRVV Trigger: CACAACCCTCCAGTATGTGCAGTGGCTGAGAATGACCCACTCCCAGCAACTTTCTGCAGCCAAGGGGTTAATCCTCCCTGAGCTGAAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS GCA 90 bp | TCAGGCTTCAGCTCAGGGAGGATTAACCCCTTGGCTGCAGAAAGTTaGTGGGAGTGGGTCATTCTCAGCCACTGCACATACTGGAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: SGFSSGRINPLAAES*WEWVILSHCTYWRV Trigger: AACCCTCCAGTATGTGCAGTGGCTGAGAATGACCCACTCCCAGCAACTTTCTGCAGCCAAGGGGTTAATCCTCCCTGAGCTGAAGCCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS TCA 90 bp | TCCAAGTATGGTCCCAGGACTGACTGCATCATCTGGGAACTTGATTaGAATGCGAATTTTTGGGCCCAACCCAGACTTACAGAATCAGAA | + |
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Preference number: 5 (lower is better) Translates to: SKYGPRTDCIIWELD*NANFWAQPRLTESE Trigger: TTCTGATTCTGTAAGTCTGGGTTGGGCCCAAAAATTCGCATTTCAATCAAGTTCCCAGATGATGCAGTCAGTCCTGGGACCATACTTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS GCA 90 bp | TGTCCTTTTGATCTAAGGAATAATAGTGGTCCTGTTCACCACAGTTaGATTGGTAAGAGTGACGATGGTATCTTCTGTGAGGTCCACTCT | + |
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Preference number: 5 (lower is better) Translates to: CPFDLRNNSGPVHHS*IGKSDDGIFCEVHS Trigger: AGAGTGGACCTCACAGAAGATACCATCGTCACTCTTACCAATGCAACTGTGGTGAACAGGACCACTATTATTCCTTAGATCAAAAGGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000607172.1 ENST00000607754.2 |
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| CDS CCA 90 bp | GGCCAAGTTGTGAACCATAGAGCAAAAACAGCAATTCCTAAAGTATaGTCCCACATATCCAGCATCAGCATCATCTGGGAATTGTTTGAA | + |
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Preference number: 5 (lower is better) Translates to: GQVVNHRAKTAIPKV*SHISSISIIWELFE Trigger: TTCAAACAATTCCCAGATGATGCTGATGCTGGATATGTGGGACCATACTTTAGGAATTGCTGTTTTTGCTCTATGGTTCACAACTTGGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS GCA 90 bp | ATCCACAAAGCACTAGATAATCAAAGTTTAATTGTGAACATCCTATaGAAATTGCTGGCATGCCATGAGGATGCTGTTGAATGTGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: IHKALDNQSLIVNIL*KLLACHEDAVECAV Trigger: GACAGCACATTCAACAGCATCCTCATGGCATGCCAGCAATTTGCATAGGATGTTCACAATTAAACTTTGATTATCTAGTGCTTTGTGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607172.1 |
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| CDS TCA 90 bp | GGAAACTGCCAAACTGCTTCCAAATTGGCAATAAATTCCCAGTCATaGGATTTTAGTTTTTCTCCAGCTTCCCACCAATATTTGCTATTG | + |
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Preference number: 5 (lower is better) Translates to: GNCQTASKLAINSQS*DFSFSPASHQYLLL Trigger: CAATAGCAAATATTGGTGGGAAGCTGGAGAAAAACTAAAATCTCATGACTGGGAATTTATTGCCAATTTGGAAGCAGTTTGGCAGTTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 90 bp | CACTGTCCACAGAGGACCTTTCCGCGTCCTGCTGAGAGGGAGCTGTaGCGGGGGCGCCAAAGAGCGGCGACAGCGGGCAGGACAGCGAGG | + |
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Preference number: 6 (lower is better) Translates to: HCPQRTFPRPAEREL*RGRQRAATAGRTAR Trigger: CCTCGCTGTCCTGCCCGCTGTCGCCGCTCTTTGGCGCCCCCGCAACAGCTCCCTCTCAGCAGGACGCGGAAAGGTCCTCTGTGGACAGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS TCA 72 bp | AGCTCACTGTCCACAGAGGACCTTTCCGCGTCCTGCTaGGAGGGAGCTGTTGCGGGGGCGCCAAAGAGCGGC | + |
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Preference number: 6 (lower is better) Translates to: SSLSTEDLSASC*EGAVAGAPKSG Trigger: GCCGCTCTTTGGCGCCCCCGCAACAGCTCCCTCTCAGCAGGACGCGGAAAGGTCCTCTGTGGACAGTGAGCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS CCA 72 bp | TGCTGGGAGTGGGTCATTCTCAGCCACTGCACATACTaGAGGGTTGTGAGGTCAGTCCAGCTCACTGTCCAC | + |
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Preference number: 6 (lower is better) Translates to: CWEWVILSHCTY*RVVRSVQLTVH Trigger: GTGGACAGTGAGCTGGACTGACCTCACAACCCTCCAGTATGTGCAGTGGCTGAGAATGACCCACTCCCAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS GCA 72 bp | GCAGAAAGTTGCTGGGAGTGGGTCATTCTCAGCCACTaGACATACTGGAGGGTTGTGAGGTCAGTCCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: AESCWEWVILSH*TYWRVVRSVQL Trigger: GAGCTGGACTGACCTCACAACCCTCCAGTATGTGCAGTGGCTGAGAATGACCCACTCCCAGCAACTTTCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS GCA 72 bp | AGCTCAGGGAGGATTAACCCCTTGGCTGCAGAAAGTTaGTGGGAGTGGGTCATTCTCAGCCACTGCACATAC | + |
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Preference number: 6 (lower is better) Translates to: SSGRINPLAAES*WEWVILSHCTY Trigger: GTATGTGCAGTGGCTGAGAATGACCCACTCCCAGCAACTTTCTGCAGCCAAGGGGTTAATCCTCCCTGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS CCA 72 bp | TCAGGGAGGATTAACCCCTTGGCTGCAGAAAGTTGCTaGGAGTGGGTCATTCTCAGCCACTGCACATACTGG | + |
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Preference number: 6 (lower is better) Translates to: SGRINPLAAESC*EWVILSHCTYW Trigger: CCAGTATGTGCAGTGGCTGAGAATGACCCACTCCCAGCAACTTTCTGCAGCCAAGGGGTTAATCCTCCCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607754.2 |
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| CDS TCA 72 bp | GCCAGCTCCCCAGTAGATTCCAAATACAGCCAGGGTTaGAGTTGGTCTTACCCAGTGGTTCTCCAAGTATGG | + |
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Preference number: 6 (lower is better) Translates to: ASSPVDSKYSQG*SWSYPVVLQVW Trigger: CCATACTTGGAGAACCACTGGGTAAGACCAACTTCAACCCTGGCTGTATTTGGAATCTACTGGGGAGCTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CCA 72 bp | CCAAATACAGCCAGGGTTGAAGTTGGTCTTACCCAGTaGTTCTCCAAGTATGGTCCCAGGACTGACTGCATC | + |
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Preference number: 6 (lower is better) Translates to: PNTARVEVGLTQ*FSKYGPRTDCI Trigger: GATGCAGTCAGTCCTGGGACCATACTTGGAGAACCACTGGGTAAGACCAACTTCAACCCTGGCTGTATTTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 90 bp | TTTTGCCAGCTCCCCAGTAGATTCCAAATACAGCCAGGGTTGAAGTaGGTCTTACCCAGTGGTTCTCCAAGTATGGTCCCAGGACTGACT | + |
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Preference number: 6 (lower is better) Translates to: FCQLPSRFQIQPGLK*VLPSGSPSMVPGLT Trigger: AGTCAGTCCTGGGACCATACTTGGAGAACCACTGGGTAAGACCAACTTCAACCCTGGCTGTATTTGGAATCTACTGGGGAGCTGGCAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 72 bp | CTCCCCAGTAGATTCCAAATACAGCCAGGGTTGAAGTaGGTCTTACCCAGTGGTTCTCCAAGTATGGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: LPSRFQIQPGLK*VLPSGSPSMVP Trigger: TGGGACCATACTTGGAGAACCACTGGGTAAGACCAACTTCAACCCTGGCTGTATTTGGAATCTACTGGGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 72 bp | TGCCAGCTCCCCAGTAGATTCCAAATACAGCCAGGGTaGAAGTTGGTCTTACCCAGTGGTTCTCCAAGTATG | + |
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Preference number: 6 (lower is better) Translates to: CQLPSRFQIQPG*KLVLPSGSPSM Trigger: CATACTTGGAGAACCACTGGGTAAGACCAACTTCAACCCTGGCTGTATTTGGAATCTACTGGGGAGCTGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS TCA 72 bp | GGTCCCAGGACTGACTGCATCATCTGGGAACTTGATTaGAATGCGAATTTTTGGGCCCAACCCAGACTTACA | + |
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Preference number: 6 (lower is better) Translates to: GPRTDCIIWELD*NANFWAQPRLT Trigger: TGTAAGTCTGGGTTGGGCCCAAAAATTCGCATTTCAATCAAGTTCCCAGATGATGCAGTCAGTCCTGGGACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 72 bp | AGTATGGTCCCAGGACTGACTGCATCATCTGGGAACTaGATTGAAATGCGAATTTTTGGGCCCAACCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: SMVPGLTASSGN*IEMRIFGPNPD Trigger: GTCTGGGTTGGGCCCAAAAATTCGCATTTCAATCAAGTTCCCAGATGATGCAGTCAGTCCTGGGACCATACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 90 bp | GTGAGGTCCACTCTGTCTCTTCAAGTTGTCTTTGTGACAGAGAGCTaGACTAGCAGAGTGTTCATGGGTCAGAGAGAAGCACAGTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: VRSTLSLQVVFVTES*TSRVFMGQREAQCL Trigger: AAGACACTGTGCTTCTCTCTGACCCATGAACACTCTGCTAGTCAAGCTCTCTGTCACAAAGACAACTTGAAGAGACAGAGTGGACCTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000607172.1 ENST00000607754.2 |
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| CDS TCA 72 bp | TGGGCCCAACCCAGACTTACAGAATCAGAAACTCCATaGGAGGGGCCCAGCAATCTGTATTTTAATAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: WAQPRLTESETP*EGPSNLYFNSP Trigger: AGGACTATTAAAATACAGATTGCTGGGCCCCTCTCATGGAGTTTCTGATTCTGTAAGTCTGGGTTGGGCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 72 bp | ACTCTGTCTCTTCAAGTTGTCTTTGTGACAGAGAGCTaGACTAGCAGAGTGTTCATGGGTCAGAGAGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: TLSLQVVFVTES*TSRVFMGQREA Trigger: TGCTTCTCTCTGACCCATGAACACTCTGCTAGTCAAGCTCTCTGTCACAAAGACAACTTGAAGAGACAGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000607172.1 ENST00000607754.2 |
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| CDS CAA 72 bp | TGGTCCCACATATCCAGCATCAGCATCATCTGGGAATaGTTTGAACTACAAATTCCTGAGTCCACTGAGATC | + |
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Preference number: 6 (lower is better) Translates to: WSHISSISIIWE*FELQIPESTEI Trigger: GATCTCAGTGGACTCAGGAATTTGTAGTTCAAACAATTCCCAGATGATGCTGATGCTGGATATGTGGGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS GCA 72 bp | GATCTAAGGAATAATAGTGGTCCTGTTCACCACAGTTaGATTGGTAAGAGTGACGATGGTATCTTCTGTGAG | + |
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Preference number: 6 (lower is better) Translates to: DLRNNSGPVHHS*IGKSDDGIFCE Trigger: CTCACAGAAGATACCATCGTCACTCTTACCAATGCAACTGTGGTGAACAGGACCACTATTATTCCTTAGATC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000607172.1 ENST00000607754.2 |
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| CDS CCA 72 bp | GTGAACCATAGAGCAAAAACAGCAATTCCTAAAGTATaGTCCCACATATCCAGCATCAGCATCATCTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: VNHRAKTAIPKV*SHISSISIIWE Trigger: TTCCCAGATGATGCTGATGCTGGATATGTGGGACCATACTTTAGGAATTGCTGTTTTTGCTCTATGGTTCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 72 bp | CCCACATATCCAGCATCAGCATCATCTGGGAATTGTTaGAACTACAAATTCCTGAGTCCACTGAGATCTACT | + |
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Preference number: 6 (lower is better) Translates to: PTYPASASSGNC*NYKFLSPLRST Trigger: AGTAGATCTCAGTGGACTCAGGAATTTGTAGTTCAAACAATTCCCAGATGATGCTGATGCTGGATATGTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS GCA 72 bp | AGTTTAATTGTGAACATCCTATGCAAATTGCTGGCATaGCATGAGGATGCTGTTGAATGTGCTGTCCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: SLIVNILCKLLA*HEDAVECAVLL Trigger: CAAAAGGACAGCACATTCAACAGCATCCTCATGGCATGCCAGCAATTTGCATAGGATGTTCACAATTAAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000607172.1 ENST00000607754.2 |
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| CDS CAA 72 bp | CCAGCTTCCCACCAATATTTGCTATTGTTTGTCTTTTaGGTTATAGCCACTCTAGTGGGTGTAAAGTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: PASHQYLLLFVF*VIATLVGVKSV Trigger: GACTGACTTTACACCCACTAGAGTGGCTATAACCAAAAAGACAAACAATAGCAAATATTGGTGGGAAGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 90 bp | AAGTATGGTCCCACATATCCAGCATCAGCATCATCTGGGAATTGTTaGAACTACAAATTCCTGAGTCCACTGAGATCTACTGATTCACAT | + |
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Preference number: 6 (lower is better) Translates to: KYGPTYPASASSGNC*NYKFLSPLRSTDSH Trigger: ATGTGAATCAGTAGATCTCAGTGGACTCAGGAATTTGTAGTTCAAACAATTCCCAGATGATGCTGATGCTGGATATGTGGGACCATACTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 90 bp | TTTCAGAGATACATAGCTGAATACTGTATAACTCATTGTGATCTTTaGATGGATAGCCTTGAAGTCAAGCAACTCCTTTCCTCCTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: FQRYIAEYCITHCDL*MDSLEVKQLLSSSV Trigger: AACTGAGGAGGAAAGGAGTTGCTTGACTTCAAGGCTATCCATCAAAAGATCACAATGAGTTATACAGTATTCAGCTATGTATCTCTGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 90 bp | AGTTTTTCTCCAGCTTCCCACCAATATTTGCTATTGTTTGTCTTTTaGGTTATAGCCACTCTAGTGGGTGTAAAGTCAGTCCTAAACTAT | + |
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Preference number: 6 (lower is better) Translates to: SFSPASHQYLLLFVF*VIATLVGVKSVLNY Trigger: ATAGTTTAGGACTGACTTTACACCCACTAGAGTGGCTATAACCAAAAAGACAAACAATAGCAAATATTGGTGGGAAGCTGGAGAAAAACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS TCA 72 bp | CAAACTGCTTCCAAATTGGCAATAAATTCCCAGTCATaGGATTTTAGTTTTTCTCCAGCTTCCCACCAATAT | + |
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Preference number: 6 (lower is better) Translates to: QTASKLAINSQS*DFSFSPASHQY Trigger: ATATTGGTGGGAAGCTGGAGAAAAACTAAAATCTCATGACTGGGAATTTATTGCCAATTTGGAAGCAGTTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS GCA 72 bp | ATTAGAATCACCTGGGAAGCTTTAAAAACATACTTATaGCAGACCCCAACCCAAACTAATTATATCCCAATC | + |
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Preference number: 6 (lower is better) Translates to: IRITWEALKTYL*QTPTQTNYIPI Trigger: GATTGGGATATAATTAGTTTGGGTTGGGGTCTGGCATAAGTATGTTTTTAAAGCTTCCCAGGTGATTCTAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CCA 72 bp | CATATAAATGGAATCATATATGTCATCGTTTGTGTCTaGTTTCTTTCAGCATGTTTTCACGGTTCATCCAGG | + |
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Preference number: 6 (lower is better) Translates to: HINGIIYVIVCV*FLSACFHGSSR Trigger: CCTGGATGAACCGTGAAAACATGCTGAAAGAAACCAGACACAAACGATGACATATATGATTCCATTTATATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 72 bp | TCCAAACCCAGAGTTATTTTCTTGGGGCTAGGGTGTTaGATCAGGTTTCAAGTTTATTTAGATATAAGCGTA | + |
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Preference number: 6 (lower is better) Translates to: SKPRVIFLGLGC*IRFQVYLDISV Trigger: TACGCTTATATCTAAATAAACTTGAAACCTGATCAAACACCCTAGCCCCAAGAAAATAACTCTGGGTTTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 90 bp | GTTGTGTTGTCCAAACCCAGAGTTATTTTCTTGGGGCTAGGGTGTTaGATCAGGTTTCAAGTTTATTTAGATATAAGCGTAATTTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: VVLSKPRVIFLGLGC*IRFQVYLDISVISH Trigger: ATGAGAAATTACGCTTATATCTAAATAAACTTGAAACCTGATCAAACACCCTAGCCCCAAGAAAATAACTCTGGGTTTGGACAACACAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 72 bp | TCATCAGTTGATGGACATTTGAATTGTTTCCACCTTTaGGCCACTATGAATAATGCTGCTATGAACATTTAC | + |
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Preference number: 6 (lower is better) Translates to: SSVDGHLNCFHL*ATMNNAAMNIY Trigger: GTAAATGTTCATAGCAGCATTATTCATAGTGGCCAAAAGGTGGAAACAATTCAAATGTCCATCAACTGATGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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| CDS CAA 72 bp | GACATTTCATATAAATGGAATCATATATGTCATCGTTaGTGTCTGGTTTCTTTCAGCATGTTTTCACGGTTC | + |
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Preference number: 6 (lower is better) Translates to: DISYKWNHICHR*CLVSFSMFSRF Trigger: GAACCGTGAAAACATGCTGAAAGAAACCAGACACAAACGATGACATATATGATTCCATTTATATGAAATGTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666705.1 |
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