Pregenerated sensors for LINC01558 (Homo sapiens)
Ensembl gene IDs: ENSG00000146521Ensembl transcript IDs: ENST00000366822.3, ENST00000495520.5
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAGGGGAGGCAAACCTCCCTTCCCGCTGTGTCCCGCCTTTCCTCCTaGCGGTTGCGTTTCCACGTGTCCTGCCTGCTGCCCGCCCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: EGRQTSLPAVSRLSS*RLRFHVSCLLPAPA Trigger: GGCTGGGGCGGGCAGCAGGCAGGACACGTGGAAACGCAACCGCCAGGAGGAAAGGCGGGACACAGCGGGAAGGGAGGTTTGCCTCCCCTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS TCA 90 bp | CGGCGACCACCGCGGCAGCTCCCCGGGGACTCCTCGCAGGTCAGCTaGGCTTTGCTTTCAGTCGGCGTGCACGGTTCCCAAACGTCGGTG | + |
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Preference number: 5 (lower is better) Translates to: RRPPRQLPGDSSQVS*ALLSVGVHGSQTSV Trigger: CACCGACGTTTGGGAACCGTGCACGCCGACTGAAAGCAAAGCTCAGCTGACCTGCGAGGAGTCCCCGGGGAGCTGCCGCGGTGGTCGCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366822.3 ENST00000495520.5 |
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| CDS TCA 90 bp | TTACTTGCTCTATCTGGCAACTCCTTCCATAAGGGAAGTCTGAAGTaGGCAGTCGAGCTGGGAGAGCAGAGTCATGCGGGGCAGGGGAAT | + |
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Preference number: 5 (lower is better) Translates to: LLALSGNSFHKGSLK*AVELGEQSHAGQGN Trigger: ATTCCCCTGCCCCGCATGACTCTGCTCTCCCAGCTCGACTGCTCACTTCAGACTTCCCTTATGGAAGGAGTTGCCAGATAGAGCAAGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366822.3 ENST00000495520.5 |
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| CDS TCA 90 bp | GTATTTTACTTGCTCTATCTGGCAACTCCTTCCATAAGGGAAGTCTaGAGTGAGCAGTCGAGCTGGGAGAGCAGAGTCATGCGGGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: VFYLLYLATPSIREV*SEQSSWESRVMRGR Trigger: CCTGCCCCGCATGACTCTGCTCTCCCAGCTCGACTGCTCACTTCAGACTTCCCTTATGGAAGGAGTTGCCAGATAGAGCAAGTAAAATAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366822.3 ENST00000495520.5 |
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| CDS GCA 90 bp | TGTGTTTTGTCTTCGATAACCTTCCCGCTGTGCCTAACCAGTGCCTaGTGTCCCCATGAATCTCCTCCTCTGTGCAATGTGCATGAAGCC | + |
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Preference number: 5 (lower is better) Translates to: CVLSSITFPLCLTSA*CPHESPPLCNVHEA Trigger: GGCTTCATGCACATTGCACAGAGGAGGAGATTCATGGGGACAGCAGGCACTGGTTAGGCACAGCGGGAAGGTTATCGAAGACAAAACACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366822.3 ENST00000495520.5 |
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| CDS GCA 90 bp | CTGCATTGCCTGTTTTGTCTCTTAATTGAGCCTGAGATCTCAGGGTaGAAGGTCACAGATCTCTTTCACAGCACAGTCCACAGCTGGTGC | + |
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Preference number: 5 (lower is better) Translates to: LHCLFCLLIEPEISG*KVTDLFHSTVHSWC Trigger: GCACCAGCTGTGGACTGTGCTGTGAAAGAGATCTGTGACCTTGCACCCTGAGATCTCAGGCTCAATTAAGAGACAAAACAGGCAATGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS TCA 90 bp | GATCTCTTTCACAGCACAGTCCACAGCTGGTGCCAAGACAGCATGTaGCTGAGATGTCTAACCTTAACCGACACTATGAGCTACAACACT | + |
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Preference number: 5 (lower is better) Translates to: DLFHSTVHSWCQDSM*LRCLTLTDTMSYNT Trigger: AGTGTTGTAGCTCATAGTGTCGGTTAAGGTTAGACATCTCAGTCACATGCTGTCTTGGCACCAGCTGTGGACTGTGCTGTGAAAGAGATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS GCA 90 bp | AGATTGTTCAAATCAACATCGGCCAGCCTGCTAAATACTTACCTGTaGACTTCTGGATCAAGCTCTGTGGGCATAGCAGGTCATTTAAAC | + |
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Preference number: 5 (lower is better) Translates to: RLFKSTSASLLNTYL*TSGSSSVGIAGHLN Trigger: GTTTAAATGACCTGCTATGCCCACAGAGCTTGATCCAGAAGTGCACAGGTAAGTATTTAGCAGGCTGGCCGATGTTGATTTGAACAATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS TCA 90 bp | TTAACCGACACTATGAGCTACAACACTTACAAACCCCAAAGTTACTaGGATTTTAAACGTGCTCAGCTCTCGTCACATATGTTTAATGCA | + |
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Preference number: 5 (lower is better) Translates to: LTDTMSYNTYKPQSY*DFKRAQLSSHMFNA Trigger: TGCATTAAACATATGTGACGAGAGCTGAGCACGTTTAAAATCTCAGTAACTTTGGGGTTTGTAAGTGTTGTAGCTCATAGTGTCGGTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS GCA 72 bp | CCCTTCCCGCTGTGTCCCGCCTTTCCTCCTGGCGGTTaGGTTTCCACGTGTCCTGCCTGCTGCCCGCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: PFPLCPAFPPGG*VSTCPACCPPQ Trigger: CTGGGGCGGGCAGCAGGCAGGACACGTGGAAACGCAACCGCCAGGAGGAAAGGCGGGACACAGCGGGAAGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS CAA 72 bp | TCCCTTCCCGCTGTGTCCCGCCTTTCCTCCTGGCGGTaGCGTTTCCACGTGTCCTGCCTGCTGCCCGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SLPAVSRLSSWR*RFHVSCLLPAP Trigger: TGGGGCGGGCAGCAGGCAGGACACGTGGAAACGCAACCGCCAGGAGGAAAGGCGGGACACAGCGGGAAGGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS TCA 72 bp | CCGCGGCAGCTCCCCGGGGACTCCTCGCAGGTCAGCTaGGCTTTGCTTTCAGTCGGCGTGCACGGTTCCCAA | + |
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Preference number: 6 (lower is better) Translates to: PRQLPGDSSQVS*ALLSVGVHGSQ Trigger: TTGGGAACCGTGCACGCCGACTGAAAGCAAAGCTCAGCTGACCTGCGAGGAGTCCCCGGGGAGCTGCCGCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366822.3 ENST00000495520.5 |
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| CDS GCA 72 bp | AGCTCCCCGGGGACTCCTCGCAGGTCAGCTGAGCTTTaGTTTCAGTCGGCGTGCACGGTTCCCAAACGTCGG | + |
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Preference number: 6 (lower is better) Translates to: SSPGTPRRSAEL*FQSACTVPKRR Trigger: CCGACGTTTGGGAACCGTGCACGCCGACTGAAAGCAAAGCTCAGCTGACCTGCGAGGAGTCCCCGGGGAGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000366822.3 ENST00000495520.5 |
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| CDS TCA 72 bp | TTGCTCTATCTGGCAACTCCTTCCATAAGGGAAGTCTaGAGTGAGCAGTCGAGCTGGGAGAGCAGAGTCATG | + |
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Preference number: 6 (lower is better) Translates to: LLYLATPSIREV*SEQSSWESRVM Trigger: CATGACTCTGCTCTCCCAGCTCGACTGCTCACTTCAGACTTCCCTTATGGAAGGAGTTGCCAGATAGAGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000366822.3 ENST00000495520.5 |
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| CDS TCA 72 bp | CACAGCACAGTCCACAGCTGGTGCCAAGACAGCATGTaGCTGAGATGTCTAACCTTAACCGACACTATGAGC | + |
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Preference number: 6 (lower is better) Translates to: HSTVHSWCQDSM*LRCLTLTDTMS Trigger: GCTCATAGTGTCGGTTAAGGTTAGACATCTCAGTCACATGCTGTCTTGGCACCAGCTGTGGACTGTGCTGTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS GCA 72 bp | AAATCAACATCGGCCAGCCTGCTAAATACTTACCTGTaGACTTCTGGATCAAGCTCTGTGGGCATAGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: KSTSASLLNTYL*TSGSSSVGIAG Trigger: ACCTGCTATGCCCACAGAGCTTGATCCAGAAGTGCACAGGTAAGTATTTAGCAGGCTGGCCGATGTTGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS CCA 72 bp | ATCGGCCAGCCTGCTAAATACTTACCTGTGCACTTCTaGATCAAGCTCTGTGGGCATAGCAGGTCATTTAAA | + |
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Preference number: 6 (lower is better) Translates to: IGQPAKYLPVHF*IKLCGHSRSFK Trigger: TTTAAATGACCTGCTATGCCCACAGAGCTTGATCCAGAAGTGCACAGGTAAGTATTTAGCAGGCTGGCCGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS TCA 72 bp | CCCATTTTTGGTGAGGGTCTGACAAATCAGATGCTCTaGAACATGGGTGGAAGCGATGTCAATCATGCAACT | + |
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Preference number: 6 (lower is better) Translates to: PIFGEGLTNQML*NMGGSDVNHAT Trigger: AGTTGCATGATTGACATCGCTTCCACCCATGTTTCAGAGCATCTGATTTGTCAGACCCTCACCAAAAATGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000495520.5 |
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| CDS GCA 72 bp | CCAACTCATCATTTAGGACGTGGTTGGAATAGGAATTaGTCAGTAGAGACTAATGCTAACTCCTTTGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: PTHHLGRGWNRN*SVETNANSFVL Trigger: GAGCACAAAGGAGTTAGCATTAGTCTCTACTGAGCAATTCCTATTCCAACCACGTCCTAAATGATGAGTTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS CAA 72 bp | TCTCATACCCAAGCAGAGAGCCACTTCGGTAGCACATaGAGATTACACAATTGCTTGCATCTTTTATTGATG | + |
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Preference number: 6 (lower is better) Translates to: SHTQAESHFGST*RLHNCLHLLLM Trigger: CATCAATAAAAGATGCAAGCAATTGTGTAATCTCAATGTGCTACCGAAGTGGCTCTCTGCTTGGGTATGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS CAA 90 bp | CTCTCGTCACATATGTTTAATGCACTAAAGAGCACATTCTTGAGATaGTTCAAATCAACATCGGCCAGCCTGCTAAATACTTACCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: LSSHMFNALKSTFLR*FKSTSASLLNTYLC Trigger: GCACAGGTAAGTATTTAGCAGGCTGGCCGATGTTGATTTGAACAATCTCAAGAATGTGCTCTTTAGTGCATTAAACATATGTGACGAGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS CAA 90 bp | GCTCAGCTCTCGTCACATATGTTTAATGCACTAAAGAGCACATTCTaGAGATTGTTCAAATCAACATCGGCCAGCCTGCTAAATACTTAC | + |
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Preference number: 6 (lower is better) Translates to: AQLSSHMFNALKSTF*RLFKSTSASLLNTY Trigger: GTAAGTATTTAGCAGGCTGGCCGATGTTGATTTGAACAATCTCAAGAATGTGCTCTTTAGTGCATTAAACATATGTGACGAGAGCTGAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS TCA 72 bp | ACTATGAGCTACAACACTTACAAACCCCAAAGTTACTaGGATTTTAAACGTGCTCAGCTCTCGTCACATATG | + |
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Preference number: 6 (lower is better) Translates to: TMSYNTYKPQSY*DFKRAQLSSHM Trigger: CATATGTGACGAGAGCTGAGCACGTTTAAAATCTCAGTAACTTTGGGGTTTGTAAGTGTTGTAGCTCATAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS CAA 72 bp | TCGTCACATATGTTTAATGCACTAAAGAGCACATTCTaGAGATTGTTCAAATCAACATCGGCCAGCCTGCTA | + |
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Preference number: 6 (lower is better) Translates to: SSHMFNALKSTF*RLFKSTSASLL Trigger: TAGCAGGCTGGCCGATGTTGATTTGAACAATCTCAAGAATGTGCTCTTTAGTGCATTAAACATATGTGACGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS CAA 72 bp | CATATGTTTAATGCACTAAAGAGCACATTCTTGAGATaGTTCAAATCAACATCGGCCAGCCTGCTAAATACT | + |
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Preference number: 6 (lower is better) Translates to: HMFNALKSTFLR*FKSTSASLLNT Trigger: AGTATTTAGCAGGCTGGCCGATGTTGATTTGAACAATCTCAAGAATGTGCTCTTTAGTGCATTAAACATATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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| CDS CAA 90 bp | ATTCTCCTCTTCCTACTTCTAACTCATGAAGCTAAAAACAGTTCATaGTATCATAGATCACTTTCTACTCTGAAAACATGGACAGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: ILLFLLLTHEAKNSS*YHRSLSTLKTWTEL Trigger: GAGCTCTGTCCATGTTTTCAGAGTAGAAAGTGATCTATGATACAATGAACTGTTTTTAGCTTCATGAGTTAGAAGTAGGAAGAGGAGAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000366822.3 |
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