Pregenerated sensors for LINC01525 (Homo sapiens)
Ensembl gene IDs: ENSG00000235202Ensembl transcript IDs: ENST00000442182.2, ENST00000657479.1, ENST00000664471.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACCAAGCAAGCCCTGTCTGTTAGGATTCTTCTTGGTCTCTCTGTGTaGCCTTCCTTCTTCCCAGACGCAGGGCAGTACCACTCTGGAATG | + |
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Preference number: 5 (lower is better) Translates to: TKQALSVRILLGLSV*PSFFPDAGQYHSGM Trigger: CATTCCAGAGTGGTACTGCCCTGCGTCTGGGAAGAAGGAAGGCCACACAGAGAGACCAAGAAGAATCCTAACAGACAGGGCTTGCTTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000442182.2 ENST00000657479.1 ENST00000664471.1 |
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| CDS GCA 90 bp | CCTGGAGAGCTCAGTGGGCTCAGTAATGCTGAATTATACTGGCTCTaGTTCCAGATTTTCTGTGAGTCAAGGGTCCAGAGCTTGGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: PGELSGLSNAELYWL*FQIFCESRVQSLAG Trigger: GCCAGCCAAGCTCTGGACCCTTGACTCACAGAAAATCTGGAAGCAGAGCCAGTATAATTCAGCATTACTGAGCCCACTGAGCTCTCCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664471.1 |
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| CDS CCA 90 bp | CTCTGTGTGGCCTTCCTTCTTCCCAGACGCAGGGCAGTACCACTCTaGAATGAGGGTCTTATAACCTCTGATGTTGTGGTTACAATCCAT | + |
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Preference number: 5 (lower is better) Translates to: LCVAFLLPRRRAVPL*NEGLITSDVVVTIH Trigger: ATGGATTGTAACCACAACATCAGAGGTTATAAGACCCTCATTCCAGAGTGGTACTGCCCTGCGTCTGGGAAGAAGGAAGGCCACACAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442182.2 ENST00000664471.1 |
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| CDS CCA 90 bp | ATAACCCCTGCAGTGGCTGCCCTCACACCCTCTGCTTTACACAACTaGATGGGTTATGAAGCAGGTAAAATCTCTTTAACAGCGCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: ITPAVAALTPSALHN*MGYEAGKISLTALC Trigger: GCAGAGCGCTGTTAAAGAGATTTTACCTGCTTCATAACCCATCCAGTTGTGTAAAGCAGAGGGTGTGAGGGCAGCCACTGCAGGGGTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657479.1 |
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| CDS TCA 72 bp | CCTTCTTCCCAGACGCAGGGCAGTACCACTCTGGAATaGGGGTCTTATAACCCCTGCAGTGGCTGCCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: PSSQTQGSTTLE*GSYNPCSGCPH Trigger: GTGAGGGCAGCCACTGCAGGGGTTATAAGACCCTCATTCCAGAGTGGTACTGCCCTGCGTCTGGGAAGAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657479.1 |
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| CDS CAA 90 bp | AGACTGAGGGGGAAACCAAGCAAGCCCTGTCTGTTAGGATTCTTCTaGGTCTCTCTGTGTGGCCTTCCTTCTTCCCAGACGCAGGGCAGT | + |
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Preference number: 6 (lower is better) Translates to: RLRGKPSKPCLLGFF*VSLCGLPSSQTQGS Trigger: ACTGCCCTGCGTCTGGGAAGAAGGAAGGCCACACAGAGAGACCAAGAAGAATCCTAACAGACAGGGCTTGCTTGGTTTCCCCCTCAGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000442182.2 ENST00000657479.1 ENST00000664471.1 |
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| CDS CAA 90 bp | CCTCGGTCTCCAAGTTGTTCCCTAGGAGCCCTCCTTGTCTCTCCATaGCTGAGTTATCTCCAGTTCTTCCCAAGCCAGCAATTAGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: PRSPSCSLGALLVSP*LSYLQFFPSQQLEE Trigger: CTCCTCTAATTGCTGGCTTGGGAAGAACTGGAGATAACTCAGCAATGGAGAGACAAGGAGGGCTCCTAGGGAACAACTTGGAGACCGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442182.2 ENST00000657479.1 |
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| CDS CCA 72 bp | GCCTTCCTTCTTCCCAGACGCAGGGCAGTACCACTCTaGAATGAGGGTCTTATAACCTCTGATGTTGTGGTT | + |
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Preference number: 6 (lower is better) Translates to: AFLLPRRRAVPL*NEGLITSDVVV Trigger: AACCACAACATCAGAGGTTATAAGACCCTCATTCCAGAGTGGTACTGCCCTGCGTCTGGGAAGAAGGAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442182.2 ENST00000664471.1 |
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| CDS CAA 72 bp | CTCCAGTTCTTCCCAAGCCAGCAATTAGAGGAGGCCTaGGCCATTGAATATGCCCATTGTCCAGCTGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: LQFFPSQQLEEA*AIEYAHCPAGF Trigger: AAACCCAGCTGGACAATGGGCATATTCAATGGCCAAGGCCTCCTCTAATTGCTGGCTTGGGAAGAACTGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442182.2 ENST00000657479.1 |
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| CDS GCA 72 bp | GGTTATGAAGCAGGTAAAATCTCTTTAACAGCGCTCTaGGGAAAACAGGCCTTGAGTGGCAGCTGTGGATCC | + |
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Preference number: 6 (lower is better) Translates to: GYEAGKISLTAL*GKQALSGSCGS Trigger: GGATCCACAGCTGCCACTCAAGGCCTGTTTTCCGCAGAGCGCTGTTAAAGAGATTTTACCTGCTTCATAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657479.1 |
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| CDS TCA 72 bp | CTTCCCAAGCCAGCAATTAGAGGAGGCCTTGGCCATTaGATATGCCCATTGTCCAGCTGGGTTTTTCAAAAA | + |
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Preference number: 6 (lower is better) Translates to: LPKPAIRGGLGH*ICPLSSWVFQK Trigger: TTTTTGAAAAACCCAGCTGGACAATGGGCATATTCAATGGCCAAGGCCTCCTCTAATTGCTGGCTTGGGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000442182.2 ENST00000657479.1 |
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| CDS CCA 72 bp | GCAGTGGCTGCCCTCACACCCTCTGCTTTACACAACTaGATGGGTTATGAAGCAGGTAAAATCTCTTTAACA | + |
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Preference number: 6 (lower is better) Translates to: AVAALTPSALHN*MGYEAGKISLT Trigger: TGTTAAAGAGATTTTACCTGCTTCATAACCCATCCAGTTGTGTAAAGCAGAGGGTGTGAGGGCAGCCACTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657479.1 |
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| CDS GCA 72 bp | CTCAGTGGGCTCAGTAATGCTGAATTATACTGGCTCTaGTTCCAGATTTTCTGCTGGCATTCAGCAAGATTC | + |
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Preference number: 6 (lower is better) Translates to: LSGLSNAELYWL*FQIFCWHSARF Trigger: GAATCTTGCTGAATGCCAGCAGAAAATCTGGAAGCAGAGCCAGTATAATTCAGCATTACTGAGCCCACTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000442182.2 ENST00000657479.1 |
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| CDS CAA 72 bp | TCCAAGAGAATGGATCTTTTGAGAATACCTCTGATGTaGTGGTTACAATCCATTTCAGAGCTTCTGTGCTCA | + |
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Preference number: 6 (lower is better) Translates to: SKRMDLLRIPLM*WLQSISELLCS Trigger: TGAGCACAGAAGCTCTGAAATGGATTGTAACCACAACATCAGAGGTATTCTCAAAAGATCCATTCTCTTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657479.1 |
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