Pregenerated sensors for LINC01486 (Homo sapiens)
Ensembl gene IDs: ENSG00000256560Ensembl transcript IDs: ENST00000538041.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGTAGCAGAGGAGAGAGTCGACCGAGGCGGGAGGGAGGTGGCAGGTaGAATGAAATATCGGGCAGTTTCATGTGCGGAGCTGATGTCGCC | + |
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Preference number: 5 (lower is better) Translates to: SSRGESRPRREGGGR*NEISGSFMCGADVA Trigger: GGCGACATCAGCTCCGCACATGAAACTGCCCGATATTTCATTCCACCTGCCACCTCCCTCCCGCCTCGGTCGACTCTCTCCTCTGCTACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538041.1 |
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| CDS GCA 90 bp | GAGACCATCCTGGCTAACACAGTCGAATCTCTTGTCTCTGCTCTTTaGAGCATTAATTTCTGGTTCGTGTTTAGTGAGCCAGGAAGCAGT | + |
|
Preference number: 5 (lower is better) Translates to: ETILANTVESLVSAL*SINFWFVFSEPGSS Trigger: ACTGCTTCCTGGCTCACTAAACACGAACCAGAAATTAATGCTGCAAAGAGCAGAGACAAGAGATTCGACTGTGTTAGCCAGGATGGTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538041.1 |
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| CDS CCA 90 bp | AACACAGTCGAATCTCTTGTCTCTGCTCTTTGCAGCATTAATTTCTaGTTCGTGTTTAGTGAGCCAGGAAGCAGTCATGGGTTTGGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: NTVESLVSALCSINF*FVFSEPGSSHGFGK Trigger: CTTTCCAAACCCATGACTGCTTCCTGGCTCACTAAACACGAACCAGAAATTAATGCTGCAAAGAGCAGAGACAAGAGATTCGACTGTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538041.1 |
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| CDS GCA 72 bp | GGTGGCAGGTGGAATGAAATATCGGGCAGTTTCATGTaGGGAGCTGATGTCGCCGGCATAACAAGAAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: GGRWNEISGSFM*GADVAGITRKG Trigger: ACCCTTTCTTGTTATGCCGGCGACATCAGCTCCGCACATGAAACTGCCCGATATTTCATTCCACCTGCCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538041.1 |
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| CDS GCA 72 bp | TGCGGAGCTGATGTCGCCGGCATAACAAGAAAGGGTTaGACAGAACAAATCTCTATTGTTCCCTGTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: CGADVAGITRKG*TEQISIVPCHL Trigger: AAGATGACAGGGAACAATAGAGATTTGTTCTGTGCAACCCTTTCTTGTTATGCCGGCGACATCAGCTCCGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538041.1 |
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| CDS GCA 72 bp | CTGGCTAACACAGTCGAATCTCTTGTCTCTGCTCTTTaGAGCATTAATTTCTGGTTCGTGTTTAGTGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: LANTVESLVSAL*SINFWFVFSEP Trigger: TGGCTCACTAAACACGAACCAGAAATTAATGCTGCAAAGAGCAGAGACAAGAGATTCGACTGTGTTAGCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538041.1 |
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