Pregenerated sensors for LINC01480 (Homo sapiens)
Ensembl gene IDs: ENSG00000270164, ENSG00000280540Ensembl transcript IDs: ENST00000483481.2, ENST00000487420.2, ENST00000494375.2, ENST00000597199.1, ENST00000625867.1, ENST00000626501.1, ENST00000627312.1, ENST00000627389.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCTCTGGCTGCCCCAGCCAAACTCTATGTCAATCCATTGGTCGGTaGCCTGCCAGAGTGCTGGTGCCTGTTGGTGGATTCCTCTCAGCG | + |
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Preference number: 5 (lower is better) Translates to: SSGCPSQTLCQSIGR*PARVLVPVGGFLSA Trigger: CGCTGAGAGGAATCCACCAACAGGCACCAGCACTCTGGCAGGCCACCGACCAATGGATTGACATAGAGTTTGGCTGGGGCAGCCAGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000483481.2 ENST00000487420.2 ENST00000494375.2 ENST00000597199.1 ENST00000625867.1 ENST00000626501.1 ENST00000627312.1 ENST00000627389.1 |
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| CDS GCA 90 bp | GAAAGGGAGAGAAGTGGCAGCCACCCATGTGTTCTTGCACTGATGTaGTCCTCTCGACGTCCAACCTCCTGTGTGTCTGCCTGTCTCCCG | + |
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Preference number: 5 (lower is better) Translates to: ERERSGSHPCVLALM*SSRRPTSCVSACLP Trigger: CGGGAGACAGGCAGACACACAGGAGGTTGGACGTCGAGAGGAGCACATCAGTGCAAGAACACATGGGTGGCTGCCACTTCTCTCCCTTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000494375.2 ENST00000627312.1 |
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| CDS GCA 90 bp | TATACTGTGGGTTGTGTGTTTACCCTGCTGATATTTCTTCTGCCTTaGAGAAGATTTTCGGTTTCATTAGGTCCTATTGATCTTATTCTA | + |
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Preference number: 5 (lower is better) Translates to: YTVGCVFTLLIFLLP*RRFSVSLGPIDLIL Trigger: TAGAATAAGATCAATAGGACCTAATGAAACCGAAAATCTTCTGCAAGGCAGAAGAAATATCAGCAGGGTAAACACACAACCCACAGTATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000597199.1 ENST00000627389.1 |
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| CDS CCA 72 bp | CTCTGGCTGCCCCAGCCAAACTCTATGTCAATCCATTaGTCGGTGGCCTGCCAGAGTGCTGGTGCCTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: LWLPQPNSMSIH*SVACQSAGACW Trigger: CCAACAGGCACCAGCACTCTGGCAGGCCACCGACCAATGGATTGACATAGAGTTTGGCTGGGGCAGCCAGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000483481.2 ENST00000487420.2 ENST00000494375.2 ENST00000597199.1 ENST00000625867.1 ENST00000626501.1 ENST00000627312.1 ENST00000627389.1 |
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| CDS CAA 72 bp | CCTCTGGCTGCCCCAGCCAAACTCTATGTCAATCCATaGGTCGGTGGCCTGCCAGAGTGCTGGTGCCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: PLAAPAKLYVNP*VGGLPECWCLL Trigger: CAACAGGCACCAGCACTCTGGCAGGCCACCGACCAATGGATTGACATAGAGTTTGGCTGGGGCAGCCAGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000483481.2 ENST00000487420.2 ENST00000494375.2 ENST00000597199.1 ENST00000625867.1 ENST00000626501.1 ENST00000627312.1 ENST00000627389.1 |
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| CDS GCA 72 bp | AGTCGGGTTATTCAGCGGCCCAGGCTCTCCTCTGGCTaGCCCAGCCAAACTCTATGTCAATCCATTGGTCGG | + |
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Preference number: 6 (lower is better) Translates to: SRVIQRPRLSSG*PSQTLCQSIGR Trigger: CCGACCAATGGATTGACATAGAGTTTGGCTGGGGCAGCCAGAGGAGAGCCTGGGCCGCTGAATAACCCGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000483481.2 ENST00000487420.2 ENST00000494375.2 ENST00000597199.1 ENST00000625867.1 ENST00000626501.1 ENST00000627312.1 ENST00000627389.1 |
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| CDS CCA 72 bp | TGCCCCAGCCAAACTCTATGTCAATCCATTGGTCGGTaGCCTGCCAGAGTGCTGGTGCCTGTTGGTGGATTC | + |
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Preference number: 6 (lower is better) Translates to: CPSQTLCQSIGR*PARVLVPVGGF Trigger: GAATCCACCAACAGGCACCAGCACTCTGGCAGGCCACCGACCAATGGATTGACATAGAGTTTGGCTGGGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000483481.2 ENST00000487420.2 ENST00000494375.2 ENST00000597199.1 ENST00000625867.1 ENST00000626501.1 ENST00000627312.1 ENST00000627389.1 |
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| CDS GCA 72 bp | CAGCCAAACTCTATGTCAATCCATTGGTCGGTGGCCTaGCAGAGTGCTGGTGCCTGTTGGTGGATTCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: QPNSMSIHWSVA*QSAGACWWIPL Trigger: GAGAGGAATCCACCAACAGGCACCAGCACTCTGGCAGGCCACCGACCAATGGATTGACATAGAGTTTGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000483481.2 ENST00000487420.2 ENST00000494375.2 ENST00000597199.1 ENST00000625867.1 ENST00000626501.1 ENST00000627312.1 ENST00000627389.1 |
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| CDS TCA 72 bp | GGTCTCAGTCCAGGTTCTGCTATGCCTTTCTCCTGGTaGGCCACCTATTTAAGAGTCGCTGTGTCCTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: GLSPGSAMPFSW*ATYLRVAVSCR Trigger: CCTACAGGACACAGCGACTCTTAAATAGGTGGCTCACCAGGAGAAAGGCATAGCAGAACCTGGACTGAGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000494375.2 ENST00000627312.1 |
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| CDS GCA 72 bp | TTTCCTTCACCTTTTCCGTATCATTCAAAGGGACCATaGCCTTCCCTTCCCAGCACTTCTCTTCTGTATCAA | + |
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Preference number: 6 (lower is better) Translates to: FPSPFPYHSKGP*PSLPSTSLLYQ Trigger: TTGATACAGAAGAGAAGTGCTGGGAAGGGAAGGGCATGGTCCCTTTGAATGATACGGAAAAGGTGAAGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627389.1 |
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| CDS GCA 72 bp | TTTCCTTCACCTTTTCTGTATCATTCAAAGGGACCATaGCCTTCCCTTCCCAGCACTTCTCTTCTGTATCAA | + |
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Preference number: 6 (lower is better) Translates to: FPSPFLYHSKGP*PSLPSTSLLYQ Trigger: TTGATACAGAAGAGAAGTGCTGGGAAGGGAAGGGCATGGTCCCTTTGAATGATACAGAAAAGGTGAAGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000597199.1 |
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| CDS TCA 72 bp | GTCTGGACATTAGTCCTTTGTCAGATGCCTAGTTTGTaGCTACTGTTTCCTATACTGTGGGTTGTGTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: VWTLVLCQMPSL*LLFPILWVVCL Trigger: TAAACACACAACCCACAGTATAGGAAACAGTAGTCACAAACTAGGCATCTGACAAAGGACTAATGTCCAGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000487420.2 ENST00000597199.1 ENST00000626501.1 ENST00000627389.1 |
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| CDS TCA 72 bp | CTGTTTCCTATACTGTGGGTTGTGTGTTTACCCTGCTaGTATTTCTTCTGCCTTGCAGAAGATTTTCGGTTT | + |
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Preference number: 6 (lower is better) Translates to: LFPILWVVCLPC*YFFCLAEDFRF Trigger: AAACCGAAAATCTTCTGCAAGGCAGAAGAAATATCAGCAGGGTAAACACACAACCCACAGTATAGGAAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000597199.1 ENST00000627389.1 |
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