Pregenerated sensors for LINC01443 (Homo sapiens)
Ensembl gene IDs: ENSG00000266554Ensembl transcript IDs: ENST00000580967.1, ENST00000584531.1, ENST00000647999.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCTGCTCCACACTGTCTGCATCCTCAGCTTGGAAGACCGGGAGGCTaGAAGCAGCTTGGCAGCTGGGGTCTGAAACCCCCTGCAGGCACA | + |
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Preference number: 5 (lower is better) Translates to: SAPHCLHPQLGRPGG*KQLGSWGLKPPAGT Trigger: TGTGCCTGCAGGGGGTTTCAGACCCCAGCTGCCAAGCTGCTTCCAGCCTCCCGGTCTTCCAAGCTGAGGATGCAGACAGTGTGGAGCAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS TCA 90 bp | AGCTTGGAAGACCGGGAGGCTGGAAGCAGCTTGGCAGCTGGGGTCTaGAACCCCCTGCAGGCACACTTCTTCACATGGCAGTTGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: SLEDREAGSSLAAGV*NPLQAHFFTWQLML Trigger: CAGCATCAACTGCCATGTGAAGAAGTGTGCCTGCAGGGGGTTTCAGACCCCAGCTGCCAAGCTGCTTCCAGCCTCCCGGTCTTCCAAGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CCA 90 bp | CCCCCTGCAGGCACACTTCTTCACATGGCAGTTGATGCTGGCTGCTaGCTGGGACCTCTGCTGGGCTGCCAGCCAGAATATCTGTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: PPAGTLLHMAVDAGC*LGPLLGCQPEYLFV Trigger: CACAAACAGATATTCTGGCTGGCAGCCCAGCAGAGGTCCCAGCCAGCAGCCAGCATCAACTGCCATGTGAAGAAGTGTGCCTGCAGGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CCA 90 bp | CATCCTCAGCTTGGAAGACCGGGAGGCTGGAAGCAGCTTGGCAGCTaGGGTCTGAAACCCCCTGCAGGCACACTTCTTCACATGGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: HPQLGRPGGWKQLGS*GLKPPAGTLLHMAV Trigger: AACTGCCATGTGAAGAAGTGTGCCTGCAGGGGGTTTCAGACCCCAGCTGCCAAGCTGCTTCCAGCCTCCCGGTCTTCCAAGCTGAGGATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS GCA 90 bp | CACATGGCAGTTGATGCTGGCTGCTGGCTGGGACCTCTGCTGGGCTaGCAGCCAGAATATCTGTTTGTGGCTTCTCCATGTGGCTATTTG | + |
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Preference number: 5 (lower is better) Translates to: HMAVDAGCWLGPLLG*QPEYLFVASPCGYL Trigger: CAAATAGCCACATGGAGAAGCCACAAACAGATATTCTGGCTGGCAGCCCAGCAGAGGTCCCAGCCAGCAGCCAGCATCAACTGCCATGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS GCA 90 bp | CACTTCTTCACATGGCAGTTGATGCTGGCTGCTGGCTGGGACCTCTaGTGGGCTGCCAGCCAGAATATCTGTTTGTGGCTTCTCCATGTG | + |
|
Preference number: 5 (lower is better) Translates to: HFFTWQLMLAAGWDL*WAASQNICLWLLHV Trigger: CACATGGAGAAGCCACAAACAGATATTCTGGCTGGCAGCCCAGCAGAGGTCCCAGCCAGCAGCCAGCATCAACTGCCATGTGAAGAAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CCA 72 bp | TCCTCAGCTTGGAAGACCGGGAGGCTGGAAGCAGCTTaGCAGCTGGGGTCTGAAACCCCCTGCAGGCACACT | + |
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Preference number: 6 (lower is better) Translates to: SSAWKTGRLEAA*QLGSETPCRHT Trigger: AGTGTGCCTGCAGGGGGTTTCAGACCCCAGCTGCCAAGCTGCTTCCAGCCTCCCGGTCTTCCAAGCTGAGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CCA 72 bp | CACTGTCTGCATCCTCAGCTTGGAAGACCGGGAGGCTaGAAGCAGCTTGGCAGCTGGGGTCTGAAACCCCCT | + |
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Preference number: 6 (lower is better) Translates to: HCLHPQLGRPGG*KQLGSWGLKPP Trigger: AGGGGGTTTCAGACCCCAGCTGCCAAGCTGCTTCCAGCCTCCCGGTCTTCCAAGCTGAGGATGCAGACAGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CCA 72 bp | GGCACACTTCTTCACATGGCAGTTGATGCTGGCTGCTaGCTGGGACCTCTGCTGGGCTGCCAGCCAGAATAT | + |
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Preference number: 6 (lower is better) Translates to: GTLLHMAVDAGC*LGPLLGCQPEY Trigger: ATATTCTGGCTGGCAGCCCAGCAGAGGTCCCAGCCAGCAGCCAGCATCAACTGCCATGTGAAGAAGTGTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CCA 72 bp | GCTTATCTCTGCTCCACACTGTCTGCATCCTCAGCTTaGAAGACCGGGAGGCTGGAAGCAGCTTGGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: AYLCSTLSASSA*KTGRLEAAWQL Trigger: CAGCTGCCAAGCTGCTTCCAGCCTCCCGGTCTTCCAAGCTGAGGATGCAGACAGTGTGGAGCAGAGATAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CCA 72 bp | TCTGCGAGCCAGGGATCTGAGAACAGCACTGTAGGGTaGCTTATCTCTGCTCCACACTGTCTGCATCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: SASQGSENSTVG*LISAPHCLHPQ Trigger: CTGAGGATGCAGACAGTGTGGAGCAGAGATAAGCCACCCTACAGTGCTGTTCTCAGATCCCTGGCTCGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CAA 72 bp | TGGGACCTCTGCTGGGCTGCCAGCCAGAATATCTGTTaGTGGCTTCTCCATGTGGCTATTTGGGCTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: WDLCWAASQNIC*WLLHVAIWASS Trigger: TGAAGAAGCCCAAATAGCCACATGGAGAAGCCACAAACAGATATTCTGGCTGGCAGCCCAGCAGAGGTCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CAA 90 bp | GCTGCTGGCTGGGACCTCTGCTGGGCTGCCAGCCAGAATATCTGTTaGTGGCTTCTCCATGTGGCTATTTGGGCTTCTTCAAATTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: AAGWDLCWAASQNIC*WLLHVAIWASSNFF Trigger: GAAGAAATTTGAAGAAGCCCAAATAGCCACATGGAGAAGCCACAAACAGATATTCTGGCTGGCAGCCCAGCAGAGGTCCCAGCCAGCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS TCA 72 bp | TTTTATAGTGCTCTTGAGTTCTGCGAGCCAGGGATCTaGGAACAGCACTGTAGGGTGGCTTATCTCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: FYSALEFCEPGI*EQHCRVAYLCS Trigger: GGAGCAGAGATAAGCCACCCTACAGTGCTGTTCTCAGATCCCTGGCTCGCAGAACTCAAGAGCACTATAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CCA 72 bp | GACCTCTGCTGGGCTGCCAGCCAGAATATCTGTTTGTaGCTTCTCCATGTGGCTATTTGGGCTTCTTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: DLCWAASQNICL*LLHVAIWASSN Trigger: ATTTGAAGAAGCCCAAATAGCCACATGGAGAAGCCACAAACAGATATTCTGGCTGGCAGCCCAGCAGAGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CAA 90 bp | GGCTGCCAGCCAGAATATCTGTTTGTGGCTTCTCCATGTGGCTATTaGGGCTTCTTCAAATTTCTTCTAAGAGTGATCATCCCAAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: GCQPEYLFVASPCGY*GFFKFLLRVIIPRE Trigger: TTCTCTTGGGATGATCACTCTTAGAAGAAATTTGAAGAAGCCCAAATAGCCACATGGAGAAGCCACAAACAGATATTCTGGCTGGCAGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CCA 72 bp | CTGCCAGCCAGAATATCTGTTTGTGGCTTCTCCATGTaGCTATTTGGGCTTCTTCAAATTTCTTCTAAGAGT | + |
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Preference number: 6 (lower is better) Translates to: LPARISVCGFSM*LFGLLQISSKS Trigger: ACTCTTAGAAGAAATTTGAAGAAGCCCAAATAGCCACATGGAGAAGCCACAAACAGATATTCTGGCTGGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580967.1 |
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| CDS CAA 72 bp | GCAGTAAGAAATAGAATCACAATTCAAACCTGGATTTaGTCTCCAAATCCAGCAATTCTGAACTATGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: AVRNRITIQTWI*SPNPAILNYGA Trigger: AGCGCCATAGTTCAGAATTGCTGGATTTGGAGACAAAATCCAGGTTTGAATTGTGATTCTATTTCTTACTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000580967.1 ENST00000584531.1 ENST00000647999.1 |
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