Pregenerated sensors for LINC01433 (Homo sapiens)
Ensembl gene IDs: ENSG00000230176Ensembl transcript IDs: ENST00000419003.3, ENST00000658198.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCCCATCTGGGCGGCAGATGGCACCAGAGGATGTGGATCAGCCCTTaGGGTTGTCCTTGCTTCCAGAGATCCTGGAAGCCGGGGTACCCC | + |
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Preference number: 5 (lower is better) Translates to: PHLGGRWHQRMWISP*GCPCFQRSWKPGYP Trigger: GGGGTACCCCGGCTTCCAGGATCTCTGGAAGCAAGGACAACCTCAAGGGCTGATCCACATCCTCTGGTGCCATCTGCCGCCCAGATGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS TCA 90 bp | GAAGGTGGCTGCCACTGTCTGCAGGGAAGCTCCAAAGGACAGGCATaGAGGCTGGTGAGCTTGTCGATGGGTGAGGAAGTTGCCTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: EGGCHCLQGSSKGQA*RLVSLSMGEEVASR Trigger: CCTGGAGGCAACTTCCTCACCCATCGACAAGCTCACCAGCCTTCATGCCTGTCCTTTGGAGCTTCCCTGCAGACAGTGGCAGCCACCTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS TCA 90 bp | GCCACTGTCTGCAGGGAAGCTCCAAAGGACAGGCATGAAGGCTGGTaGGCTTGTCGATGGGTGAGGAAGTTGCCTCCAGGTGGCTTCTAT | + |
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Preference number: 5 (lower is better) Translates to: ATVCREAPKDRHEGW*ACRWVRKLPPGGFY Trigger: ATAGAAGCCACCTGGAGGCAACTTCCTCACCCATCGACAAGCTCACCAGCCTTCATGCCTGTCCTTTGGAGCTTCCCTGCAGACAGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS TCA 90 bp | AAGCTCCAAAGGACAGGCATGAAGGCTGGTGAGCTTGTCGATGGGTaGGGAAGTTGCCTCCAGGTGGCTTCTATTTTGTCTGTCATACAG | + |
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Preference number: 5 (lower is better) Translates to: KLQRTGMKAGELVDG*GSCLQVASILSVIQ Trigger: CTGTATGACAGACAAAATAGAAGCCACCTGGAGGCAACTTCCTCACCCATCGACAAGCTCACCAGCCTTCATGCCTGTCCTTTGGAGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658198.1 |
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| CDS TCA 90 bp | AAGCTCCAAAGGACAGGCATGAAGGCTGGTGAGCTTGTCGATGGGTaGGGAAGTTGCCTCCAGGTGGCTTCTATTTTGTCTATGAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: KLQRTGMKAGELVDG*GSCLQVASILSMKQ Trigger: TTGCTTCATAGACAAAATAGAAGCCACCTGGAGGCAACTTCCTCACCCATCGACAAGCTCACCAGCCTTCATGCCTGTCCTTTGGAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419003.3 |
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| CDS GCA 90 bp | CCCACAGCACGAGAAACCATGCAACCAATTCTCCATAGAACCTGGTaGAGGAAAGAACTTTCCTCTCCTGTGAACTTCTACCAGGCAATG | + |
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Preference number: 5 (lower is better) Translates to: PTARETMQPILHRTW*RKELSSPVNFYQAM Trigger: CATTGCCTGGTAGAAGTTCACAGGAGAGGAAAGTTCTTTCCTGCACCAGGTTCTATGGAGAATTGGTTGCATGGTTTCTCGTGCTGTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658198.1 |
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| CDS CCA 90 bp | TCTACCAGGCAATGGGAATTTTATAGGAATCATTGGCATGGGTGTTaGCCTGAGCGTGCCACATTTGCCACTTCTGATAGAGCCCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: STRQWEFYRNHWHGC*PERATFATSDRALW Trigger: CCAAAGGGCTCTATCAGAAGTGGCAAATGTGGCACGCTCAGGCCAACACCCATGCCAATGATTCCTATAAAATTCCCATTGCCTGGTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658198.1 |
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| CDS CCA 90 bp | ATGCCCACAGCACGAGAAACCATGCAACCAATTCTCCATAGAACCTaGTGCAGGAAAGAACTTTCCTCTCCTGTGAACTTCTACCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: MPTARETMQPILHRT*CRKELSSPVNFYQA Trigger: TGCCTGGTAGAAGTTCACAGGAGAGGAAAGTTCTTTCCTGCACCAGGTTCTATGGAGAATTGGTTGCATGGTTTCTCGTGCTGTGGGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658198.1 |
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| CDS TCA 90 bp | TCTATTTTGTCTATGAAGCAAGAGACCAAATTGCCTATTGACAAATaGTGGTGGAGAGGGGTGTCCTCCGGATTTCCACCATTTATCTTG | + |
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Preference number: 5 (lower is better) Translates to: SILSMKQETKLPIDK*WWRGVSSGFPPFIL Trigger: CAAGATAAATGGTGGAAATCCGGAGGACACCCCTCTCCACCATCATTTGTCAATAGGCAATTTGGTCTCTTGCTTCATAGACAAAATAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419003.3 |
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| CDS TCA 90 bp | CAATTCTCCATAGAACCTGGTGCAGGAAAGAACTTTCCTCTCCTGTaGACTTCTACCAGGCAATGGGAATTTTATAGGAATCATTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: QFSIEPGAGKNFPLL*TSTRQWEFYRNHWH Trigger: ATGCCAATGATTCCTATAAAATTCCCATTGCCTGGTAGAAGTTCACAGGAGAGGAAAGTTCTTTCCTGCACCAGGTTCTATGGAGAATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658198.1 |
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| CDS CAA 90 bp | TCCCCATCTGGGCGGCAGATGGCACCAGAGGATGTGGATCAGCCCTaGAGGTTGTCCTTGCTTCCAGAGATCCTGGAAGCCGGGGTACCC | + |
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Preference number: 6 (lower is better) Translates to: SPSGRQMAPEDVDQP*RLSLLPEILEAGVP Trigger: GGGTACCCCGGCTTCCAGGATCTCTGGAAGCAAGGACAACCTCAAGGGCTGATCCACATCCTCTGGTGCCATCTGCCGCCCAGATGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS TCA 72 bp | GGCGGCAGATGGCACCAGAGGATGTGGATCAGCCCTTaGGGTTGTCCTTGCTTCCAGAGATCCTGGAAGCCG | + |
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Preference number: 6 (lower is better) Translates to: GGRWHQRMWISP*GCPCFQRSWKP Trigger: CGGCTTCCAGGATCTCTGGAAGCAAGGACAACCTCAAGGGCTGATCCACATCCTCTGGTGCCATCTGCCGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS CCA 72 bp | ATTTTCTCGGTGCAGCAAGAGGGCTGTGTCCCCATCTaGGCGGCAGATGGCACCAGAGGATGTGGATCAGCC | + |
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Preference number: 6 (lower is better) Translates to: IFSVQQEGCVPI*AADGTRGCGSA Trigger: GGCTGATCCACATCCTCTGGTGCCATCTGCCGCCCAGATGGGGACACAGCCCTCTTGCTGCACCGAGAAAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS CAA 72 bp | GGGCGGCAGATGGCACCAGAGGATGTGGATCAGCCCTaGAGGTTGTCCTTGCTTCCAGAGATCCTGGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: GRQMAPEDVDQP*RLSLLPEILEA Trigger: GGCTTCCAGGATCTCTGGAAGCAAGGACAACCTCAAGGGCTGATCCACATCCTCTGGTGCCATCTGCCGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS TCA 72 bp | TGCAGGGAAGCTCCAAAGGACAGGCATGAAGGCTGGTaGGCTTGTCGATGGGTGAGGAAGTTGCCTCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: CREAPKDRHEGW*ACRWVRKLPPG Trigger: ACCTGGAGGCAACTTCCTCACCCATCGACAAGCTCACCAGCCTTCATGCCTGTCCTTTGGAGCTTCCCTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS TCA 72 bp | TGCCACTGTCTGCAGGGAAGCTCCAAAGGACAGGCATaGAGGCTGGTGAGCTTGTCGATGGGTGAGGAAGTT | + |
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Preference number: 6 (lower is better) Translates to: CHCLQGSSKGQA*RLVSLSMGEEV Trigger: AACTTCCTCACCCATCGACAAGCTCACCAGCCTTCATGCCTGTCCTTTGGAGCTTCCCTGCAGACAGTGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS GCA 72 bp | TGTCATACAGCAGCAAAGGCAGCAAGAGACAGCGCCTaGCAAATACCCCAGGCCCTTGGAGGACACAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: CHTAAKAARDSA*QIPQALGGHSS Trigger: AGAACTGTGTCCTCCAAGGGCCTGGGGTATTTGGCAGGCGCTGTCTCTTGCTGCCTTTGCTGCTGTATGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS TCA 72 bp | CTGCCAAATACCCCAGGCCCTTGGAGGACACAGTTCTaGGGTTTGCACAAAGCCACAGCTAAATACCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: LPNTPGPWRTQF*GLHKATAKYLH Trigger: GTGAAGGTATTTAGCTGTGGCTTTGTGCAAACCTCAGAACTGTGTCCTCCAAGGGCCTGGGGTATTTGGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000419003.3 ENST00000658198.1 |
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| CDS CCA 72 bp | GTGAGCTTGTCGATGGGTGAGGAAGTTGCCTCCAGGTaGCTTCTATTTTGTCTGTCATACAGCAGCAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: VSLSMGEEVASR*LLFCLSYSSKG Trigger: GCCTTTGCTGCTGTATGACAGACAAAATAGAAGCCACCTGGAGGCAACTTCCTCACCCATCGACAAGCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658198.1 |
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| CDS CAA 90 bp | TTTATAGGAATCATTGGCATGGGTGTTGGCCTGAGCGTGCCACATTaGCCACTTCTGATAGAGCCCTTTGGGTTTCAATCTATGCCAAGT | + |
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Preference number: 6 (lower is better) Translates to: FIGIIGMGVGLSVPH*PLLIEPFGFQSMPS Trigger: ACTTGGCATAGATTGAAACCCAAAGGGCTCTATCAGAAGTGGCAAATGTGGCACGCTCAGGCCAACACCCATGCCAATGATTCCTATAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658198.1 |
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| CDS TCA 72 bp | TCTATGAAGCAAGAGACCAAATTGCCTATTGACAAATaGTGGTGGAGAGGGGTGTCCTCCGGATTTCCACCA | + |
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Preference number: 6 (lower is better) Translates to: SMKQETKLPIDK*WWRGVSSGFPP Trigger: TGGTGGAAATCCGGAGGACACCCCTCTCCACCATCATTTGTCAATAGGCAATTTGGTCTCTTGCTTCATAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419003.3 |
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| CDS CCA 72 bp | CAATGGGAATTTTATAGGAATCATTGGCATGGGTGTTaGCCTGAGCGTGCCACATTTGCCACTTCTGATAGA | + |
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Preference number: 6 (lower is better) Translates to: QWEFYRNHWHGC*PERATFATSDR Trigger: TCTATCAGAAGTGGCAAATGTGGCACGCTCAGGCCAACACCCATGCCAATGATTCCTATAAAATTCCCATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658198.1 |
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| CDS TCA 72 bp | TATTTTGTCTATGAAGCAAGAGACCAAATTGCCTATTaGCAAATGATGGTGGAGAGGGGTGTCCTCCGGATT | + |
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Preference number: 6 (lower is better) Translates to: YFVYEARDQIAY*QMMVERGVLRI Trigger: AATCCGGAGGACACCCCTCTCCACCATCATTTGTCAATAGGCAATTTGGTCTCTTGCTTCATAGACAAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419003.3 |
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